Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_26680 and PS417_26685 are separated by 67 nucleotidesPS417_26685 and PS417_26690 overlap by 1 nucleotidesPS417_26690 and PS417_26695 are separated by 81 nucleotidesPS417_26695 and PS417_26700 are separated by 24 nucleotides PS417_26680: PS417_26680 - energy transducer TonB, at 5,768,246 to 5,769,151 _26680 PS417_26685: PS417_26685 - hypothetical protein, at 5,769,219 to 5,769,788 _26685 PS417_26690: PS417_26690 - Holliday junction resolvase, at 5,769,788 to 5,770,225 _26690 PS417_26695: PS417_26695 - uracil phosphoribosyltransferase, at 5,770,307 to 5,770,813 _26695 PS417_26700: PS417_26700 - aspartate carbamoyltransferase catalytic subunit, at 5,770,838 to 5,771,842 _26700
Group Condition PS417_26680 PS417_26685 PS417_26690 PS417_26695 PS417_26700
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.5 N.D. -3.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.4 N.D. -3.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.8 N.D. -3.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.4 N.D. -3.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. -1.6 N.D. -2.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.7 N.D. -2.0 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.4 N.D. -3.0 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.3 N.D. -3.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.1 N.D. -3.2 N.D.
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. -3.1 N.D. -0.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.6 N.D. -2.5 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.1 N.D. -3.0 N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x N.D. -0.6 N.D. -2.3 N.D.
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.7 N.D. -2.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -1.3 N.D. -1.5 N.D.
stress Polymyxin B sulfate 0.006 mg/ml N.D. -0.7 N.D. -2.0 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. -1.3 N.D. -1.4 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. -0.7 N.D. -1.9 N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.4 N.D. -2.2 N.D.
carbon source 2-Deoxy-D-ribonic lithium salt (C) N.D. +0.0 N.D. -2.6 N.D.
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x N.D. +0.3 N.D. -2.8 N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.7 N.D. -1.8 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. -0.5 N.D. -2.0 N.D.
nitrogen source Ammonium chloride (N) N.D. +0.2 N.D. -2.6 N.D.
soil soil sample 6; outgrowth in LB N.D. -3.1 N.D. +1.0 N.D.
phage P. simiae OR1 MOI 0.1 N.D. +1.0 N.D. -2.7 N.D.
carbon source 2'-Deoxyinosine 5 mM (C) N.D. +0.8 N.D. -1.6 N.D.
nitrogen source Inosine (N) N.D. +1.2 N.D. -1.9 N.D.
carbon source Trisodium citrate (C) N.D. -0.4 N.D. +3.7 N.D.
carbon source Trisodium citrate (C) N.D. +0.1 N.D. +4.7 N.D.
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