Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_26670 and PS417_26675 are separated by 239 nucleotidesPS417_26675 and PS417_26680 are separated by 77 nucleotidesPS417_26680 and PS417_26685 are separated by 67 nucleotidesPS417_26685 and PS417_26690 overlap by 1 nucleotides PS417_26670: PS417_26670 - pilus assembly protein PilG, at 5,766,568 to 5,766,975 _26670 PS417_26675: PS417_26675 - glutathione synthetase, at 5,767,215 to 5,768,168 _26675 PS417_26680: PS417_26680 - energy transducer TonB, at 5,768,246 to 5,769,151 _26680 PS417_26685: PS417_26685 - hypothetical protein, at 5,769,219 to 5,769,788 _26685 PS417_26690: PS417_26690 - Holliday junction resolvase, at 5,769,788 to 5,770,225 _26690
Group Condition PS417_26670 PS417_26675 PS417_26680 PS417_26685 PS417_26690
soil soil sample 6; outgrowth in LB N.D. N.D. N.D. -3.1 N.D.
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. N.D. N.D. -3.1 N.D.
phage Wcs_1 N.D. N.D. N.D. -1.9 N.D.
phage JP1 MOI 0.1 N.D. N.D. N.D. -1.9 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -1.7 N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. N.D. -1.6 N.D.
soil soil sample 5; outgrowth in LB N.D. N.D. N.D. -1.6 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -1.5 N.D.
soil soil sample 2; outgrowth in LB N.D. N.D. N.D. -1.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. -1.5 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -1.4 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -1.4 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -1.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. -1.3 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. -1.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -1.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -1.2 N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x N.D. N.D. N.D. -1.2 N.D.
no phage control Time6-nophage N.D. N.D. N.D. -1.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days N.D. N.D. N.D. -1.1 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB N.D. N.D. N.D. -1.1 N.D.
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x N.D. N.D. N.D. -1.1 N.D.
stress R2A with Polymyxin B sulfate 0.002 mg/ml N.D. N.D. N.D. -1.1 N.D.
carbon source Deoxyribonucleic from herring sperm 5 mg/mL (C) N.D. N.D. N.D. +1.1 N.D.
carbon source Deoxyribonucleic from herring sperm 5 mg/mL (C) N.D. N.D. N.D. +1.1 N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. N.D. N.D. +1.2 N.D.
nitrogen source Inosine (N) N.D. N.D. N.D. +1.2 N.D.
phage JP1 MOI 10 N.D. N.D. N.D. +1.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. N.D. +1.4 N.D.
seeds Growth on radish seeds for 72 hours N.D. N.D. N.D. +1.7 N.D.
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