Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_02645 and PS417_02650 are separated by 179 nucleotidesPS417_02650 and PS417_02655 are separated by 374 nucleotidesPS417_02655 and PS417_02660 are separated by 231 nucleotidesPS417_02660 and PS417_02665 are separated by 2 nucleotides PS417_02645: PS417_02645 - aldehyde dehydrogenase, at 604,576 to 606,066 _02645 PS417_02650: PS417_02650 - FAD-dependent oxidoreductase, at 606,246 to 607,529 _02650 PS417_02655: PS417_02655 - amino acid ABC transporter substrate-binding protein, at 607,904 to 609,040 _02655 PS417_02660: PS417_02660 - branched-chain amino acid transporter permease subunit LivH, at 609,272 to 610,186 _02660 PS417_02665: PS417_02665 - branched-chain amino acid ABC transporter permease, at 610,189 to 611,466 _02665
Group Condition PS417_02645 PS417_02650 PS417_02655 PS417_02660 PS417_02665
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 +0.3 -3.9 -2.9 -2.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 +0.3 -3.5 -3.1 -2.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 +0.2 -2.5 -2.6 -3.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 +0.1 -2.3 -2.2 -2.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 -0.4 +0.3 -1.2 -1.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 -0.4 +0.3 -1.4 -1.0
carbon source L-Leucine (C) +0.2 +0.3 -1.0 -0.9 -0.8
carbon source L-Leucine (C) +0.2 +0.6 -0.7 -1.0 -0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 +0.3 -0.2 -0.7 -1.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.0 +0.3 -0.3 -0.8 -0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.0 -0.1 -0.1 -0.6 -0.8
carbon source L-Isoleucine (C) -0.2 -0.1 -0.4 -0.5 -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 +0.1 -0.2 -0.9 -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 +0.5 -0.5 -0.5 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.0 -0.2 +0.2 -0.5 -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.2 -0.1 -0.3 -0.3 -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.3 +0.3 +0.1 -0.3 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.0 +0.6 -0.3 -0.1 -0.3
seeds Growth on radish seeds for 72 hours -0.1 -0.7 +0.1 +0.1 +0.5
soil soil sample 7; outgrowth in LB -0.3 -0.2 +0.2 +0.3 +0.3
soil soil sample 5; outgrowth in LB -0.1 -0.5 +0.5 +0.1 +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 -0.5 +0.5 +0.4 +0.2
seeds Growth on radish seeds for 72 hours -0.5 +0.6 -0.1 -0.1 +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 +0.1 -0.3 +0.3 +0.4
phage P. simiae OR Antrim MOI 1 +0.4 +0.5 -0.2 +0.3 -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 -0.3 +0.5 +0.1 +0.3
phage P. simiae Grant Run MOI 10 +0.5 +0.5 -0.0 +0.4 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.0 +0.6 +0.4 +0.5 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.0 -0.1 +1.1 +0.9 +1.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -0.2 +1.1 +1.0 +1.3
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