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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF5200 and GFF5201 are separated by 9 nucleotides
GFF5201 and GFF5202 are separated by 52 nucleotides
GFF5202 and GFF5203 are separated by 165 nucleotides
GFF5203 and GFF5204 are separated by 66 nucleotides
GFF5200 - L-arabonate dehydratase (EC 4.2.1.25), at 60,267 to 62,003
GFF5200
GFF5201 - L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43), at 62,013 to 62,930
GFF5201
GFF5202 - hypothetical protein, at 62,983 to 63,261
GFF5202
GFF5203 - hypothetical protein, at 63,427 to 63,858
GFF5203
GFF5204 - hypothetical protein, at 63,925 to 64,329
GFF5204
Group
Condition
GFF5200
GFF5201
GFF5202
GFF5203
GFF5204
complex community
Community=Kojac gum; Passage=4
-0.6
-0.2
-0.2
-4.0
N.D.
complex community
Community=guar; Passage=4
-0.1
-0.2
-0.3
-1.5
N.D.
complex community
Community=arabino-guar; Passage=4
-0.4
-0.5
-0.4
-0.0
N.D.
complex community
Community=guar; Passage=4
-0.7
+0.2
-0.6
-0.1
N.D.
no phage control
no phage control
-0.1
+0.1
-0.2
-0.8
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.2
-0.0
-0.3
-0.3
N.D.
complex community
Community=Locust bean gum; Passage=4
+0.7
-1.0
+0.1
-0.7
N.D.
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.3
+0.4
-0.1
-1.0
N.D.
phage
phage_bap4
+0.4
-0.1
+0.0
-0.8
N.D.
complex community
Community=guar; Passage=4
-0.1
+0.0
+0.3
-0.6
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.5
-0.2
-0.2
+0.7
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.4
+0.1
+0.0
-0.3
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.3
+0.2
+0.0
+0.3
N.D.
complex community
Community=Locust bean gum; Passage=4
-0.1
-0.1
-0.2
+0.7
N.D.
complex community
Community=arabino-guar; Passage=4
+0.8
+0.4
-0.4
-0.5
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.2
+0.2
+0.0
+0.4
N.D.
complex community
Community=arabino-guar; Passage=4
+0.4
-0.1
-0.1
+0.3
N.D.
complex community
Community=Locust bean gum; Passage=4
+0.3
+0.3
-0.3
+0.3
N.D.
vitamin
M9 with Supernatant from Cyptococcus
+0.0
-0.3
+0.1
+0.6
N.D.
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.4
+0.1
-0.1
+0.2
N.D.
vitamin
M9 with Supernatant from Cyptococcus
-0.1
-0.1
+0.0
+0.8
N.D.
vitamin
M9 with Supernatant from Cyptococcus
+0.1
-0.2
-0.1
+1.0
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.1
+0.3
-0.2
+0.6
N.D.
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.2
+0.1
+0.0
+1.0
N.D.
phage
phage_bap4
+0.3
+0.3
+0.1
+0.3
N.D.
phage
phage_bap4
+0.3
+0.2
-0.1
+0.5
N.D.
complex community
Community=guar; Passage=4
+0.4
-0.1
+0.7
+0.1
N.D.
complex community
Community=Locust bean gum; Passage=4
+0.8
-0.0
-0.3
+0.8
N.D.
phage
phage_bap4
+0.4
+0.1
+0.0
+0.9
N.D.
complex community
Community=arabino-guar; Passage=4
+0.1
-0.1
-0.4
+1.8
N.D.
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