Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_26610 and PS417_26615 overlap by 1 nucleotidesPS417_26615 and PS417_26620 are separated by 0 nucleotidesPS417_26620 and PS417_26625 are separated by 164 nucleotidesPS417_26625 and PS417_26630 overlap by 38 nucleotides PS417_26610: PS417_26610 - malonate decarboxylase subunit delta, at 5,752,015 to 5,752,314 _26610 PS417_26615: PS417_26615 - triphosphoribosyl-dephospho-CoA synthase, at 5,752,314 to 5,753,147 _26615 PS417_26620: PS417_26620 - malonate decarboxylase subunit alpha, at 5,753,148 to 5,754,818 _26620 PS417_26625: PS417_26625 - hypothetical protein, at 5,754,983 to 5,755,417 _26625 PS417_26630: PS417_26630 - transcriptional regulator, at 5,755,380 to 5,756,009 _26630
Group Condition PS417_26610 PS417_26615 PS417_26620 PS417_26625 PS417_26630
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.1 -0.2 -0.9 -0.9
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. -1.1 -0.1 +0.1 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.8 -0.1 +0.2 -0.5
soil soil sample 7; outgrowth in LB N.D. -0.7 +0.4 -0.4 -0.5
seeds Growth on radish seeds for 72 hours N.D. -0.8 +0.2 -0.5 +0.1
carbon source 2'-Deoxyinosine 5 mM (C) N.D. -0.7 +0.3 -0.2 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.6 -0.0 +0.4 -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.9 -0.2 +0.5 -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.4 -0.1 +0.4 +0.6
phage JP1 MOI 1 N.D. -0.2 +0.2 +0.2 -0.8
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.9 +0.1 +0.3 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.3 -0.2 +0.2 -0.8
stress Phosphomycin 0.001 mg/ml N.D. -0.5 -0.0 -0.4 +0.5
phage JP1 MOI 0.1 N.D. +0.2 -0.3 -0.7 +0.5
agar plate interaction control Taped volatile agar plate with no fungus N.D. -0.5 -0.1 +0.0 +0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days N.D. -0.7 +0.5 +0.5 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.5 +0.0 +0.4 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. +0.5 +0.2 +0.4 -0.4
phage P. simiae ORA MOI 1 N.D. +0.5 -0.0 +0.7 -0.3
soil soil sample 6; outgrowth in LB N.D. +0.6 +0.4 +0.4 -0.3
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. -0.2 +0.2 +0.6 +0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. +1.1 -0.0 +0.2 -0.1
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. -0.2 +0.5 +0.5 +0.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +0.6 +0.4 +0.6 -0.3
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +0.2 +0.3 +0.8 +0.0
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. +0.7 +0.2 +0.3 +0.1
soil soil sample 2; outgrowth in LB N.D. +0.6 +0.4 +0.1 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +1.2 -0.0 +0.4 +0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. +0.4 +0.4 +0.7 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. +0.5 +0.5 +0.2 +0.6
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