Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_26575 and PS417_26580 are separated by 106 nucleotidesPS417_26580 and PS417_26585 are separated by 1 nucleotidesPS417_26585 and PS417_26590 are separated by 67 nucleotidesPS417_26590 and PS417_26595 overlap by 4 nucleotides PS417_26575: PS417_26575 - LysR family transcriptional regulator, at 5,746,671 to 5,747,591 _26575 PS417_26580: PS417_26580 - malonate transporter, at 5,747,698 to 5,748,462 _26580 PS417_26585: PS417_26585 - malonate carrier protein, at 5,748,464 to 5,748,868 _26585 PS417_26590: PS417_26590 - malonate decarboxylase subunit epsilon, at 5,748,936 to 5,749,835 _26590 PS417_26595: PS417_26595 - phosphoribosyl-dephospho-CoA transferase, at 5,749,832 to 5,750,419 _26595
Group Condition PS417_26575 PS417_26580 PS417_26585 PS417_26590 PS417_26595
rhizosphere rhizosphere sample 2; outgrowth in LB -0.2 -1.0 -0.1 -0.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 -0.3 -0.6 -0.3 N.D.
stress methylglyoxal 0.032 vol% -0.7 +0.3 -0.6 -0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 -0.9 -0.2 -0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 -0.9 +0.1 -0.4 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 -0.3 +0.4 -0.4 N.D.
stress Gentamicin 0.008 mg/ml +0.2 +0.2 -1.0 -0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +0.0 -0.6 -0.5 N.D.
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 -0.2 -0.3 -0.4 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 -0.6 +0.4 -0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.1 +0.8 -0.6 -0.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 +0.8 -0.5 +0.4 N.D.
seeds Growth on radish seeds for 72 hours -0.1 -0.5 +1.1 -0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.2 -0.2 +1.0 -0.3 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 +0.6 -0.3 +0.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 +0.3 -0.5 +0.4 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.3 +0.4 +0.3 -0.5 N.D.
carbon source L-Valine (C) +0.3 -0.4 +0.8 -0.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 +0.1 +1.1 -0.4 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 +0.5 +0.1 -0.6 N.D.
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.3 +0.3 +0.5 +0.4 N.D.
phage P. simiae ORA MOI 0.1 -0.2 +0.3 +0.2 +0.6 N.D.
phage P. simiae Grant Run MOI 10 -0.3 +0.4 +0.4 +0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 +0.2 +0.7 +0.6 N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.6 +0.8 -0.3 -0.0 N.D.
stress L-Lysine 60 mM -0.2 +0.3 +0.7 +0.3 N.D.
phage P. simiae Grant Run MOI 0.1 +0.3 -0.2 +0.2 +0.8 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 +0.6 +0.5 -0.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 +0.2 -0.3 +1.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +0.4 +0.1 +0.5 N.D.
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