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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF5187 and GFF5188 are separated by 778 nucleotides
GFF5188 and GFF5189 are separated by 85 nucleotides
GFF5189 and GFF5190 are separated by 140 nucleotides
GFF5190 and GFF5191 are separated by 114 nucleotides
GFF5187 - Aldose 1-epimerase (EC 5.1.3.3), at 44,205 to 45,284
GFF5187
GFF5188 - no description, at 46,063 to 47,025
GFF5188
GFF5189 - L-arabinolactonase (EC 3.1.1.15), at 47,111 to 48,064
GFF5189
GFF5190 - L-arabinose 1-dehydrogenase (EC 1.1.1.376), at 48,205 to 48,978
GFF5190
GFF5191 - Galactose-binding protein regulator, at 49,093 to 50,052
GFF5191
Group
Condition
GFF5187
GFF5188
GFF5189
GFF5190
GFF5191
complex community
Community=Locust bean gum; Passage=4
+0.1
-0.3
-0.1
-0.3
-2.4
complex community
Community=arabino-guar; Passage=4
+0.3
-2.5
+0.2
-0.1
+0.2
vitamin
M9 with Supernatant from Cyptococcus
-0.3
-0.8
-0.2
+0.0
-0.1
complex community
Community=arabino-guar; Passage=4
-0.3
-0.7
+0.4
-0.4
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.3
-0.5
-0.0
-0.3
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.2
-0.6
+0.1
-0.2
+0.0
complex community
Community=Locust bean gum; Passage=4
-0.6
+0.0
-0.0
+0.2
-0.4
complex community
Community=guar; Passage=4
+0.4
-1.4
+0.3
+0.4
-0.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.1
-0.9
+0.0
-0.2
+0.3
vitamin
M9 with Supernatant from Cyptococcus
-0.2
-0.6
-0.2
+0.1
+0.2
phage
phage_bap4
+0.1
-0.4
+0.2
-0.3
-0.0
complex community
Community=Locust bean gum; Passage=4
-0.4
+0.6
-0.0
+0.1
-0.9
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.3
-0.4
-0.1
+0.1
+0.3
phage
phage_bap4
-0.4
+0.4
+0.2
+0.0
-0.5
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.0
+0.4
+0.0
+0.0
-0.7
phage
phage_bap4
-0.1
+0.4
-0.0
-0.4
-0.2
complex community
Community=Locust bean gum; Passage=4
+0.2
-0.8
+0.4
+0.1
+0.1
vitamin
M9 with Supernatant from Cyptococcus
-0.4
+0.4
+0.0
-0.1
+0.1
complex community
Community=Kojac gum; Passage=4
-0.3
+0.7
+0.2
+0.2
-0.8
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.1
-0.3
+0.1
-0.2
+0.5
complex community
Community=guar; Passage=4
+0.2
-0.9
+0.3
+0.0
+0.6
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.0
-0.1
-0.2
+0.0
+0.6
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.1
-0.4
+0.1
+0.1
+0.5
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.4
+0.4
+0.0
-0.2
+0.5
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.2
-0.4
+0.2
+0.0
+0.3
complex community
Community=guar; Passage=4
-0.6
-0.4
+0.3
+0.1
+0.9
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.1
+0.6
+0.1
-0.1
+0.3
complex community
Community=arabino-guar; Passage=4
-0.0
-0.1
+0.1
+0.5
+0.6
complex community
Community=guar; Passage=4
+0.2
-0.2
+0.4
+0.3
+0.8
phage
phage_bap4
+0.2
+0.6
+0.2
+0.0
+0.5
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