Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_26560	PS417_26565	PS417_26570	PS417_26575	PS417_26580
phage	P. simiae OR Antrim MOI 0.1	-0.3	-1.2	-0.2	-0.5	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.2	-1.5	-0.2	+0.1	+0.1
seeds	Growth on radish seeds for 72 hours	-0.3	-0.9	+0.5	-0.1	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-2.0	-0.0	+0.2	+0.5
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	-0.8	-0.5	+0.1	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-1.0	-0.1	+0.2	+0.1
carbon source	L-Valine (C)	+0.4	-1.1	+0.3	+0.1	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-1.4	+0.1	+0.1	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	-0.0	-0.2	-0.7	+0.8
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	+0.5	-1.2	-0.1	+0.1	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.9	+0.3	-0.2	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-0.9	+0.0	+0.5	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	-1.0	-0.2	+0.1	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.7	+0.3	-0.0	+0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.2	-0.8	+0.9	-0.1	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	+0.4	+0.4	-0.5	-0.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	-0.7	+0.2	-0.0	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.1	-0.7	+0.5	-0.1	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.4	-0.4	-0.3	+0.6	+0.8
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+0.4	+0.4	+0.1	-0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.9	-0.4	-0.3	-0.1	+0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	-0.6	+0.5	+0.2	+0.6
phage	Wcs_1	-0.3	-0.3	+0.5	+0.1	+0.8
rhizosphere	rhizosphere sample 8; outgrowth in LB	-0.0	+1.3	+0.0	+0.2	-0.4
carbon source	2-Deoxy-D-Ribose 10 mM (C)	-0.1	+1.1	-0.1	+0.1	+0.4
phage	P. simiae ORA MOI 1	+0.2	+0.7	+0.1	-0.1	+0.6
root	root sample 6; outgrowth in LB	-0.3	+1.8	-0.3	-0.3	+0.8
carbon source	Carbon source D-Mannitol 5 mM	+0.3	+0.8	+0.3	+0.1	+0.2
carbon source	2-Deoxy-D-Ribose 10 mM (C)	+0.3	+0.7	+0.1	+0.2	+0.3
supernatant control	Vogels_fungal_media 0.1X	+0.6	+0.7	+0.5	-0.3	+0.2