Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_26540	PS417_26545	PS417_26550	PS417_26555	PS417_26560
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-2.4	-0.2	+0.1	-1.3	+0.1
nitrogen source	Ammonium chloride (N)	-2.9	+0.0	-0.5	-0.1	-0.2
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.5	-0.6	+0.1	-1.2	+0.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.7	-0.1	+0.1	-0.9	-0.3
nitrogen source	Adenine (N)	-2.3	+0.1	-0.5	+0.1	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-2.2	+0.8	-0.7	-0.4
nitrogen source	nitrate (N)	-2.4	+0.0	-0.1	+0.1	-0.1
carbon source	D-Gluconic Acid (C)	-1.9	-0.2	+0.1	+0.1	-0.2
stress	Doxycycline hyclate 0.001 mg/ml	-0.0	-1.5	-0.4	-0.3	+0.2
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-0.2	-0.9	-0.2	-1.0	+0.2
no phage control	Time6-nophage	-1.7	+0.0	-0.3	-0.2	+0.2
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.9	-0.6	-0.4	+0.0	+0.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.8	+0.3	+0.2	-0.9	+0.4
carbon source	L-Valine (C)	-1.0	+0.2	-0.9	-0.6	+0.4
no phage control	no phage control	-1.6	+0.2	-0.2	-0.4	+0.1
phage	FRSphage	-1.8	+0.0	+0.2	-0.1	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.2	-0.7	-1.0	+0.1
carbon source	D-Gluconic Acid (C)	-1.9	+0.2	+0.1	-0.1	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	-1.3	+0.5	-0.3	-0.2
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.7	-0.2	+0.0	+0.7	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.2	+0.2	-0.6	+0.5	+0.2
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-0.1	-0.1	+0.1	-1.3	+0.5
carbon source	D-Glucose (C)	-1.4	+0.2	+0.1	+0.3	-0.1
stress	methylglyoxal 0.032 vol%	+0.3	-1.5	+0.2	+0.6	+0.3
agar plate interaction control	Taped volatile agar plate with no fungus	-0.3	-0.4	-0.5	+1.1	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.7	+1.0	+0.2	-0.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.1	+0.7	+0.3	+0.2	+0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.3	-0.5	+0.6	+0.7	+0.2
seeds	Growth on radish seeds for 24 hours	-0.3	+0.7	+0.4	-0.0	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.2	+3.4	+0.1	-0.4	-0.3