Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_26530	PS417_26535	PS417_26540	PS417_26545	PS417_26550
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	-2.7	-1.8	-0.1	-0.4	+0.0
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-1.3	-2.0	-0.2	-0.9	-0.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.5	-0.4	-2.4	-0.2	+0.1
carbon source	L-Valine (C)	-1.8	-0.2	-1.0	+0.2	-0.9
phage	P. simiae OR1 MOI 0.1	-2.3	-0.7	-0.0	-0.3	-0.2
phage	P. simiae OR Antrim MOI 0.1	-2.6	+0.2	-0.2	-0.5	-0.3
agar plate interaction control	Taped volatile agar plate with no fungus	-1.9	-0.2	-0.3	-0.4	-0.5
carbon source	Carbon source D-Mannitol 5 mM	-3.8	+0.2	+0.0	+0.1	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-3.0	-0.2	+0.2	-0.1	-0.1
nitrogen source	Ammonium chloride (N)	+0.6	-0.4	-2.9	+0.0	-0.5
nitrogen source	nitrate (N)	-0.3	-0.2	-2.4	+0.0	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.8	-0.5	-1.2	+0.2	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.4	-0.0	-0.1	-0.4	+0.2
stress	methylglyoxal 0.032 vol%	-1.5	-0.3	+0.3	-1.5	+0.2
nitrogen source	Adenine (N)	+0.3	-0.1	-2.3	+0.1	-0.5
phage	P. simiae ORA MOI 0.1	-2.2	-0.6	+0.1	+0.1	+0.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	-0.6	-1.8	+0.3	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-2.2	+0.1	-0.0	-0.6	+0.9
phage	P. simiae ORA MOI 1	-1.4	-0.9	-0.1	-0.2	+0.8
phage	JP1 MOI 0.1	-2.2	+0.4	-0.4	+0.4	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.7	-0.4	+0.4	+0.7	+0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.0	-1.3	+0.8	+0.4	+0.2
carbon source	D-Gluconic Acid (C)	+0.9	-0.1	-1.9	+0.2	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+0.5	-0.1	-2.2	+0.8
phage moi 100	Time6-phageFRS	+1.3	-0.0	-1.7	+0.1	+0.0
phage	JP1 MOI 10	+1.2	+0.2	-0.0	-0.9	-0.7
soil	soil sample 5; outgrowth in LB	+1.1	-0.6	-0.2	-0.3	+1.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+2.8	-0.2	-0.8	+0.4	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+2.2	-0.3	+0.1	-0.3	+0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	-0.9	+0.3	+0.2	+3.4	+0.1