Fitness for 5 genes in Pseudomonas simiae WCS417

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

500 ntPS417_26485 and PS417_26490 overlap by 7 nucleotidesPS417_26490 and PS417_26495 are separated by 71 nucleotidesPS417_26495 and PS417_26500 are separated by 99 nucleotidesPS417_26500 and PS417_26505 are separated by 326 nucleotides PS417_26485: PS417_26485 - sodium:proton antiporter, at 5,726,989 to 5,728,248 _26485 PS417_26490: PS417_26490 - membrane protein, at 5,728,242 to 5,729,129 _26490 PS417_26495: PS417_26495 - type III secretion system effector protein exou, at 5,729,201 to 5,731,132 _26495 PS417_26500: PS417_26500 - thioesterase, at 5,731,232 to 5,731,636 _26500 PS417_26505: PS417_26505 - adenosylhomocysteinase, at 5,731,963 to 5,733,372 _26505
Group Condition PS417_26485 PS417_26490 PS417_26495 PS417_26500 PS417_26505
solid stress Fraxetin 3 mM; solid stress -0.1 +0.1 +0.2 -5.1 N.D.
solid stress Fraxetin 3 mM; solid stress +0.1 +0.1 -0.1 -4.9 N.D.
solid stress Fraxetin 3 mM; solid stress +0.0 -0.3 -0.0 -3.4 N.D.
solid stress Fraxetin 3 mM; solid stress +0.2 -0.2 +0.1 -3.4 N.D.
solid stress Fraxetin 2 mM; solid stress +0.1 +0.0 +0.0 -3.3 N.D.
solid stress Fraxetin 2 mM; solid stress -0.0 +0.1 -0.3 -2.6 N.D.
solid stress Fraxetin 2 mM; solid stress +0.0 +0.0 -0.1 -2.8 N.D.
solid stress Fraxetin 2 mM; solid stress +0.2 +0.2 +0.1 -3.3 N.D.
solid stress Fraxetin 2 mM; solid stress -0.2 +0.2 +0.2 -2.2 N.D.
liquid stress Fraxetin 3 mM; liquid stress -0.4 -0.1 +0.0 -1.0 N.D.
solid stress Fraxetin 1 mM; solid stress -0.1 +0.1 -0.3 -1.1 N.D.
liquid stress Fraxetin 3 mM; liquid stress -0.1 -0.0 +0.1 -1.3 N.D.
solid stress Fraxetin 1 mM; solid stress -0.0 +0.2 -0.3 -1.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 +0.3 -0.3 -0.4 N.D.
liquid stress Fraxetin 3 mM; liquid stress -0.2 +0.3 -0.1 -1.0 N.D.
solid stress 80% Methanol 0.5 mM; solid stress +0.3 -0.1 -0.0 -1.0 N.D.
phage JP1 MOI 0.1 -0.5 -0.6 -0.1 +0.4 N.D.
agar plate interaction control Taped volatile agar plate with no fungus +0.5 -0.1 +0.1 -0.8 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -0.2 +0.5 +0.4 N.D.
carbon source L-Valine (C) -0.4 +0.5 +0.4 -0.3 N.D.
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 -0.4 +0.5 -0.2 N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.4 +0.2 +0.0 +0.8 N.D.
phage JP1 MOI 10 -0.4 +0.1 +0.1 +0.9 N.D.
phage P. simiae OR Antrim MOI 1 +0.7 -0.6 +0.3 +0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.4 -0.0 -0.3 -0.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 +0.5 -0.4 +1.0 N.D.
phage P. simiae Grant Run MOI 0.1 +0.3 -0.4 +0.4 +0.6 N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.2 +0.3 +0.4 +0.6 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 +0.1 +0.2 +0.8 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.7 -0.1 +0.2 +0.9 N.D.
remove
PS417_26485
plot		 remove
PS417_26490
plot		 remove
PS417_26495		 remove
PS417_26500
plot		 remove
PS417_26505
plot