Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_26445	PS417_26450	PS417_26455	PS417_26460	PS417_26465
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-1.3	N.D.	-0.3	-0.1	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	N.D.	-0.3	-0.4	-1.2
soil	soil sample 4; outgrowth in LB	+0.1	N.D.	-0.5	+0.0	-1.6
rhizosphere	rhizosphere sample 1; outgrowth in LB	-1.0	N.D.	-0.2	-0.3	-0.4
rhizosphere	rhizosphere sample 8; outgrowth in LB	-0.2	N.D.	-0.3	-0.1	-1.2
phage	P. simiae ORA MOI 1	-0.9	N.D.	-0.6	-0.1	-0.2
soil	soil sample 3; outgrowth in LB	-0.5	N.D.	+0.1	+0.1	-1.1
soil	soil sample 5; outgrowth in LB	-1.2	N.D.	+0.1	-0.4	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	N.D.	-1.2	-0.1	+0.3
seeds	Growth on radish seeds for 24 hours	+0.3	N.D.	-0.3	+0.1	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	N.D.	-0.5	-0.4	+0.9
motility	inner cut, LB soft agar motility assay	+0.5	N.D.	-0.4	-0.0	-0.8
soil	soil sample 2; outgrowth in LB	+0.0	N.D.	-0.2	-1.0	+0.7
phage moi 100	Time6-phageFRS	-0.2	N.D.	-0.9	-0.1	+0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	N.D.	-0.5	-0.3	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.0	N.D.	-0.0	-0.6	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.6	N.D.	-0.2	-0.2	-0.4
seeds	Growth on radish seeds for 72 hours	+1.3	N.D.	-0.0	-0.3	-0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.5	N.D.	-0.1	-0.4	+0.8
seeds	Growth on radish seeds for 72 hours	+1.1	N.D.	+0.0	+0.3	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.9	N.D.	+2.5	+0.1	-0.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+1.2	N.D.	-0.5	+0.2	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.1	N.D.	-0.6	+0.1	+0.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	N.D.	+1.7	+0.3	-0.0
stress	Gentamicin 0.008 mg/ml	-0.7	N.D.	+0.1	-0.3	+2.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.9	N.D.	+0.1	+0.5	+0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.8	N.D.	-0.1	+0.0	+1.3
nophagecontrol	Only library	+0.5	N.D.	+1.1	+0.1	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.3	N.D.	+3.2	-0.0	-0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+3.9	N.D.	-0.8	-0.5	+0.9