Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_26430 and PS417_26435 are separated by 17 nucleotidesPS417_26435 and PS417_26440 are separated by 140 nucleotidesPS417_26440 and PS417_26445 are separated by 258 nucleotidesPS417_26445 and PS417_26450 are separated by 19 nucleotides PS417_26430: PS417_26430 - phosphoglycerate kinase, at 5,714,958 to 5,716,121 _26430 PS417_26435: PS417_26435 - glyceraldehyde-3-phosphate dehydrogenase, at 5,716,139 to 5,717,194 _26435 PS417_26440: PS417_26440 - transketolase, at 5,717,335 to 5,719,332 _26440 PS417_26445: PS417_26445 - ArsR family transcriptional regulator, at 5,719,591 to 5,720,586 _26445 PS417_26450: PS417_26450 - S-adenosylmethionine synthetase, at 5,720,606 to 5,721,796 _26450
Group Condition PS417_26430 PS417_26435 PS417_26440 PS417_26445 PS417_26450
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days N.D. N.D. N.D. -1.3 N.D.
soil soil sample 5; outgrowth in LB N.D. N.D. N.D. -1.2 N.D.
carbon source L-Valine (C) N.D. N.D. N.D. -1.1 N.D.
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. N.D. N.D. -1.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days N.D. N.D. N.D. -0.9 N.D.
root root sample 6; outgrowth in LB N.D. N.D. N.D. -0.9 N.D.
phage P. simiae ORA MOI 1 N.D. N.D. N.D. -0.9 N.D.
carbon source D-Xylose (C) N.D. N.D. N.D. -0.9 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -0.8 N.D.
nitrogen source Cytidine (N) N.D. N.D. N.D. -0.8 N.D.
stress Doxycycline hyclate 0.001 mg/ml N.D. N.D. N.D. -0.8 N.D.
stress nitrate 200 mM N.D. N.D. N.D. -0.7 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -0.7 N.D.
stress Gentamicin 0.008 mg/ml N.D. N.D. N.D. -0.7 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x N.D. N.D. N.D. -0.7 N.D.
phage P. simiae ORA MOI 10 N.D. N.D. N.D. +0.7 N.D.
carbon source L-Valine (C) N.D. N.D. N.D. +0.7 N.D.
nitrogen source Inosine (N) N.D. N.D. N.D. +0.7 N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. +0.8 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. +0.9 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. +0.9 N.D.
supernatant control Vogels_fungal_media 0.1X N.D. N.D. N.D. +1.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. +1.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. +1.0 N.D.
seeds Growth on radish seeds for 72 hours N.D. N.D. N.D. +1.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. +1.1 N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. N.D. +1.2 N.D.
seeds Growth on radish seeds for 72 hours N.D. N.D. N.D. +1.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. +1.6 N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. +3.9 N.D.
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