Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_26420 and PS417_26425 are separated by 61 nucleotidesPS417_26425 and PS417_26430 are separated by 29 nucleotidesPS417_26430 and PS417_26435 are separated by 17 nucleotidesPS417_26435 and PS417_26440 are separated by 140 nucleotides PS417_26420: PS417_26420 - hypothetical protein, at 5,714,304 to 5,714,639 _26420 PS417_26425: PS417_26425 - hypothetical protein, at 5,714,701 to 5,714,928 _26425 PS417_26430: PS417_26430 - phosphoglycerate kinase, at 5,714,958 to 5,716,121 _26430 PS417_26435: PS417_26435 - glyceraldehyde-3-phosphate dehydrogenase, at 5,716,139 to 5,717,194 _26435 PS417_26440: PS417_26440 - transketolase, at 5,717,335 to 5,719,332 _26440
Group Condition PS417_26420 PS417_26425 PS417_26430 PS417_26435 PS417_26440
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -4.2 N.D. N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -2.5 N.D. N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -2.3 N.D. N.D. N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml -2.0 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.9 N.D. N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.8 N.D. N.D. N.D. N.D.
soil soil sample 7; outgrowth in LB -1.8 N.D. N.D. N.D. N.D.
solid stress Fraxetin 2 mM; solid stress -1.7 N.D. N.D. N.D. N.D.
root root sample 6; outgrowth in LB -1.7 N.D. N.D. N.D. N.D.
phage P. simiae ORA MOI 0.1 -1.7 N.D. N.D. N.D. N.D.
phage P. simiae ORA MOI 0.1 -1.7 N.D. N.D. N.D. N.D.
solid stress Fraxetin 1 mM; solid stress -1.7 N.D. N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -1.6 N.D. N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.6 N.D. N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.6 N.D. N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -1.6 N.D. N.D. N.D. N.D.
carbon source L-Valine (C) -1.5 N.D. N.D. N.D. N.D.
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.5 N.D. N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -1.4 N.D. N.D. N.D. N.D.
stress methylglyoxal 0.032 vol% -1.4 N.D. N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -1.4 N.D. N.D. N.D. N.D.
soil soil sample 6; outgrowth in LB -1.4 N.D. N.D. N.D. N.D.
carbon source 2'-Deoxyinosine 5 mM (C) -1.3 N.D. N.D. N.D. N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -1.3 N.D. N.D. N.D. N.D.
phage JP1 MOI 0.1 +1.3 N.D. N.D. N.D. N.D.
phage P. simiae OR Antrim MOI 10 +1.8 N.D. N.D. N.D. N.D.
phage P. simiae OR Antrim MOI 0.1 +2.1 N.D. N.D. N.D. N.D.
stress Phosphomycin 0.002 mg/ml +3.9 N.D. N.D. N.D. N.D.
stress Phosphomycin 0.003 mg/ml +4.3 N.D. N.D. N.D. N.D.
stress Phosphomycin 0.001 mg/ml +4.5 N.D. N.D. N.D. N.D.
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PS417_26420
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PS417_26425
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PS417_26435
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PS417_26440
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