Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_26385	PS417_26390	PS417_26395	PS417_26400	PS417_26405
carbon source	L-Valine (C)	+0.2	-2.8	-0.7	-0.3	+0.6
phage	P. simiae OR Antrim MOI 10	-0.3	-1.1	+0.2	-0.4	+0.2
phage	P. simiae ORA MOI 0.1	+0.0	-0.8	-0.3	-0.7	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-1.4	+0.4	-0.4	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.4	-1.0	-0.4	+0.2	+0.3
phage	JP1 MOI 1	-0.3	-0.4	+0.3	-0.9	+0.4
phage	Wcs_1	+0.2	-1.0	+0.6	-0.8	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.6	-0.7	+0.5	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.0	-0.5	+0.7	-0.8	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.0	+0.8	-1.0	-0.4	+0.3
nitrogen source	Putrescine (N)	+0.0	-1.4	+0.2	+0.8	+0.1
nitrogen source	Cytosine (N)	-0.0	-1.0	-0.2	+0.7	+0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4	-0.9	-0.3	+0.5	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	+0.5	+0.8	-0.5	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	+0.9	-0.6	+0.3	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	+1.1	+0.5	-0.8	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.5	+0.8	+0.2	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.9	-0.5	+0.4	+0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	+1.2	-0.4	+0.4	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	+0.3	-0.2	+1.0	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	+1.0	-0.0	+0.2	+0.6
agar plate interaction control	Taped volatile agar plate with no fungus	+0.0	+0.8	+1.2	-0.7	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.1	+1.8	-0.4	+0.0	-0.1
nophagecontrol	Only library	+0.1	+1.2	+0.4	-0.4	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	+0.8	+0.1	+0.7	+0.3
agar plate interaction control	Taped volatile agar plate with no fungus	-0.3	+1.0	+0.9	-0.1	+0.1
seeds	Growth on radish seeds for 72 hours	+0.1	+1.1	+0.3	+0.5	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+1.8	+0.4	+0.0	+0.4
seeds	Growth on radish seeds for 72 hours	+0.2	+0.8	+1.5	+0.5	+0.3
seeds	Growth on radish seeds for 72 hours	+0.3	+2.8	+0.1	+0.8	+0.0