Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_02615	PS417_02620	PS417_02625	PS417_02630	PS417_02635
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	N.D.	N.D.	-1.4	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	N.D.	N.D.	-1.5	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	N.D.	N.D.	-2.0	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	N.D.	N.D.	-2.2	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	N.D.	N.D.	-1.4	-0.1
phage	JP1 MOI 1	-0.2	N.D.	N.D.	-2.1	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	N.D.	N.D.	-1.4	-0.2
phage	JP1 MOI 10	-1.1	N.D.	N.D.	-0.2	-0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	N.D.	N.D.	-1.9	+0.0
phage	JP1 MOI 10	+0.3	N.D.	N.D.	-2.6	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	N.D.	N.D.	-1.2	-0.2
seeds	Growth on radish seeds for 72 hours	+0.5	N.D.	N.D.	-1.8	-0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.0	N.D.	N.D.	-1.9	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	N.D.	N.D.	-1.3	+0.1
phage	P. simiae OR Antrim MOI 1	+0.2	N.D.	N.D.	-2.3	+0.5
stress	Neomycin 0.04 mg/ml	+0.1	N.D.	N.D.	-1.4	-0.2
agar plate interaction control	Taped volatile agar plate with no fungus	+0.1	N.D.	N.D.	-1.7	+0.2
supernatant control	Vogels_fungal_media 0.1X	-0.5	N.D.	N.D.	-1.1	+0.3
root	root sample 6; outgrowth in LB	-0.1	N.D.	N.D.	-1.5	+0.4
stress	Gentamicin 0.008 mg/ml	+0.6	N.D.	N.D.	-1.5	-0.2
stress	Polymyxin B sulfate 0.006 mg/ml	+0.4	N.D.	N.D.	-1.4	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	N.D.	N.D.	-1.0	+0.5
phage	P. simiae ORA MOI 0.1	+0.6	N.D.	N.D.	-1.6	+0.3
phage	P. simiae Grant Run MOI 0.1	+0.3	N.D.	N.D.	-1.1	+0.4
agar plate interaction control	Taped volatile agar plate with no fungus	+0.4	N.D.	N.D.	-1.3	+0.5
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.5	N.D.	N.D.	-0.9	+0.3
carbon source	L-Valine (C)	-0.4	N.D.	N.D.	+1.0	+0.5
stress	methylglyoxal 0.032 vol%	+0.3	N.D.	N.D.	+1.3	-0.2
phage	P. simiae OR1 MOI 0.1	+1.0	N.D.	N.D.	+1.3	+0.1
seeds	Growth on radish seeds for 72 hours	+1.8	N.D.	N.D.	+0.9	-0.2