Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_26340 and PS417_26345 are separated by 161 nucleotidesPS417_26345 and PS417_26350 are separated by 180 nucleotidesPS417_26350 and PS417_26355 overlap by 1 nucleotidesPS417_26355 and PS417_26360 are separated by 287 nucleotides PS417_26340: PS417_26340 - betaine-aldehyde dehydrogenase, at 5,693,477 to 5,694,949 _26340 PS417_26345: PS417_26345 - choline dehydrogenase, at 5,695,111 to 5,696,814 _26345 PS417_26350: PS417_26350 - peptidase C69, at 5,696,995 to 5,698,437 _26350 PS417_26355: PS417_26355 - Zn-dependent protease, at 5,698,437 to 5,699,753 _26355 PS417_26360: PS417_26360 - MFS transporter, at 5,700,041 to 5,700,889 _26360
Group Condition PS417_26340 PS417_26345 PS417_26350 PS417_26355 PS417_26360
stress Paraquat dichloride 0.008 mg/ml -3.4 -3.4 +0.1 -0.2 +0.3
stress Thallium(I) acetate 0.0625 mg/ml -3.0 -3.5 -0.1 +0.0 +0.0
stress Paraquat dichloride 0.002 mg/ml -3.2 -2.2 -0.0 -0.1 +0.2
phage P. simiae ORA MOI 0.1 -2.3 -2.2 +0.0 -0.1 +0.2
stress Choline chloride 300 mM -1.3 -2.0 -0.1 +0.1 +0.2
seeds Growth on radish seeds for 72 hours -0.8 -0.9 -0.3 -0.7 -0.3
phage P. simiae ORA MOI 0.1 -2.2 -0.6 -0.3 -0.0 +0.2
phage P. simiae ORA MOI 1 -1.2 -1.2 -0.5 +0.0 +0.1
phage Wcs_1 -0.9 -0.6 -0.6 -0.4 -0.2
stress R2A with Polymyxin B sulfate 0.003 mg/ml -1.3 -0.6 -0.2 -0.7 +0.2
seeds Growth on radish seeds for 24 hours -0.6 -1.3 -0.3 -0.4 +0.1
phage P. simiae OR Antrim MOI 1 -0.1 -1.5 -0.5 -0.0 +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.1 +0.2 -0.9 +0.1 -0.3
phage JP1 MOI 10 -1.0 -1.5 +0.2 -0.0 +0.3
stress R2A with Polymyxin B sulfate 0.003 mg/ml -1.6 -0.8 +0.2 +0.2 -0.0
seeds Growth on radish seeds for 72 hours -0.8 -1.2 -0.2 +0.0 +0.0
phage P. simiae OR1 MOI 0.1 +0.5 -1.6 -0.9 +0.1 -0.1
nophagecontrol Only library -1.5 -0.4 -0.1 +0.2 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.8 -0.8 +0.6 -0.2 -0.5
phage P. simiae OR Antrim MOI 0.1 -0.7 -0.9 -0.3 -0.1 +0.3
stress R2A with Polymyxin B sulfate 0.002 mg/ml -1.0 -0.5 -0.2 -0.2 +0.3
stress R2A with Polymyxin B sulfate 0.003 mg/ml -1.3 -0.7 +0.5 +0.1 +0.3
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.9 -0.7 +0.5 -0.0 -0.0
phage P. simiae ORA MOI 10 +0.0 -1.5 +0.6 +0.1 -0.2
phage P. simiae OR Antrim MOI 10 +0.1 -1.6 +0.1 +0.1 +0.4
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 +0.3 -0.6 -1.0 +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.0 -1.1 +0.4 +1.4 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 +0.5 -0.6 -0.5 +0.4
stress Benzalkonium Chloride 0.012 mg/ml +1.3 +0.2 -0.5 +0.1 -0.0
stress 1-ethyl-3-methylimidazolium acetate 35 mM +1.3 +0.4 -0.1 +0.0 +0.3
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