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Fitness for 5 genes in
Pseudomonas simiae WCS417
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PS417_26340 and PS417_26345 are separated by 161 nucleotides
PS417_26345 and PS417_26350 are separated by 180 nucleotides
PS417_26350 and PS417_26355 overlap by 1 nucleotides
PS417_26355 and PS417_26360 are separated by 287 nucleotides
PS417_26340: PS417_26340 - betaine-aldehyde dehydrogenase, at 5,693,477 to 5,694,949
_26340
PS417_26345: PS417_26345 - choline dehydrogenase, at 5,695,111 to 5,696,814
_26345
PS417_26350: PS417_26350 - peptidase C69, at 5,696,995 to 5,698,437
_26350
PS417_26355: PS417_26355 - Zn-dependent protease, at 5,698,437 to 5,699,753
_26355
PS417_26360: PS417_26360 - MFS transporter, at 5,700,041 to 5,700,889
_26360
Group
Condition
PS417
_26340
PS417
_26345
PS417
_26350
PS417
_26355
PS417
_26360
stress
Paraquat dichloride 0.008 mg/ml
-3.4
-3.4
+0.1
-0.2
+0.3
stress
Thallium(I) acetate 0.0625 mg/ml
-3.0
-3.5
-0.1
+0.0
+0.0
stress
Paraquat dichloride 0.002 mg/ml
-3.2
-2.2
-0.0
-0.1
+0.2
phage
P. simiae ORA MOI 0.1
-2.3
-2.2
+0.0
-0.1
+0.2
stress
Choline chloride 300 mM
-1.3
-2.0
-0.1
+0.1
+0.2
seeds
Growth on radish seeds for 72 hours
-0.8
-0.9
-0.3
-0.7
-0.3
phage
P. simiae ORA MOI 0.1
-2.2
-0.6
-0.3
-0.0
+0.2
phage
P. simiae ORA MOI 1
-1.2
-1.2
-0.5
+0.0
+0.1
phage
Wcs_1
-0.9
-0.6
-0.6
-0.4
-0.2
stress
R2A with Polymyxin B sulfate 0.003 mg/ml
-1.3
-0.6
-0.2
-0.7
+0.2
seeds
Growth on radish seeds for 24 hours
-0.6
-1.3
-0.3
-0.4
+0.1
phage
P. simiae OR Antrim MOI 1
-0.1
-1.5
-0.5
-0.0
+0.0
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-1.1
+0.2
-0.9
+0.1
-0.3
phage
JP1 MOI 10
-1.0
-1.5
+0.2
-0.0
+0.3
stress
R2A with Polymyxin B sulfate 0.003 mg/ml
-1.6
-0.8
+0.2
+0.2
-0.0
seeds
Growth on radish seeds for 72 hours
-0.8
-1.2
-0.2
+0.0
+0.0
phage
P. simiae OR1 MOI 0.1
+0.5
-1.6
-0.9
+0.1
-0.1
nophagecontrol
Only library
-1.5
-0.4
-0.1
+0.2
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
-0.8
-0.8
+0.6
-0.2
-0.5
phage
P. simiae OR Antrim MOI 0.1
-0.7
-0.9
-0.3
-0.1
+0.3
stress
R2A with Polymyxin B sulfate 0.002 mg/ml
-1.0
-0.5
-0.2
-0.2
+0.3
stress
R2A with Polymyxin B sulfate 0.003 mg/ml
-1.3
-0.7
+0.5
+0.1
+0.3
stress
R2A with Polymyxin B sulfate 0.002 mg/ml
-0.9
-0.7
+0.5
-0.0
-0.0
phage
P. simiae ORA MOI 10
+0.0
-1.5
+0.6
+0.1
-0.2
phage
P. simiae OR Antrim MOI 10
+0.1
-1.6
+0.1
+0.1
+0.4
in planta
Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
-0.1
+0.3
-0.6
-1.0
+0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-1.0
-1.1
+0.4
+1.4
-0.3
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
+0.4
+0.5
-0.6
-0.5
+0.4
stress
Benzalkonium Chloride 0.012 mg/ml
+1.3
+0.2
-0.5
+0.1
-0.0
stress
1-ethyl-3-methylimidazolium acetate 35 mM
+1.3
+0.4
-0.1
+0.0
+0.3
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