Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_26335 and PS417_26340 are separated by 110 nucleotidesPS417_26340 and PS417_26345 are separated by 161 nucleotidesPS417_26345 and PS417_26350 are separated by 180 nucleotidesPS417_26350 and PS417_26355 overlap by 1 nucleotides PS417_26335: PS417_26335 - BetI family transcriptional regulator, at 5,692,773 to 5,693,366 _26335 PS417_26340: PS417_26340 - betaine-aldehyde dehydrogenase, at 5,693,477 to 5,694,949 _26340 PS417_26345: PS417_26345 - choline dehydrogenase, at 5,695,111 to 5,696,814 _26345 PS417_26350: PS417_26350 - peptidase C69, at 5,696,995 to 5,698,437 _26350 PS417_26355: PS417_26355 - Zn-dependent protease, at 5,698,437 to 5,699,753 _26355
Group Condition PS417_26335 PS417_26340 PS417_26345 PS417_26350 PS417_26355
stress Paraquat dichloride 0.008 mg/ml -4.6 -3.4 -3.4 +0.1 -0.2
stress Paraquat dichloride 0.002 mg/ml -5.5 -3.2 -2.2 -0.0 -0.1
stress Thallium(I) acetate 0.0625 mg/ml -3.5 -3.0 -3.5 -0.1 +0.0
phage P. simiae OR Antrim MOI 1 -3.7 -0.1 -1.5 -0.5 -0.0
phage P. simiae ORA MOI 0.1 -0.5 -2.3 -2.2 +0.0 -0.1
stress R2A with Polymyxin B sulfate 0.003 mg/ml -2.3 -1.3 -0.6 -0.2 -0.7
stress Choline chloride 300 mM -0.8 -1.3 -2.0 -0.1 +0.1
phage JP1 MOI 10 -1.7 -1.0 -1.5 +0.2 -0.0
seeds Growth on radish seeds for 24 hours -1.0 -0.6 -1.3 -0.3 -0.4
liquid stress 80% Methanol 2 mM; liquid stress -2.5 -0.4 -0.3 +0.0 -0.2
stress R2A with Polymyxin B sulfate 0.002 mg/ml -1.4 -1.0 -0.5 -0.2 -0.2
stress R2A with Polymyxin B sulfate 0.002 mg/ml -1.4 -0.8 -0.6 -0.0 -0.4
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.9 -1.6 -0.8 +0.2 +0.2
stress R2A with Polymyxin B sulfate 0.003 mg/ml -1.1 -1.1 -0.5 -0.1 +0.1
stress R2A with Polymyxin B sulfate 0.003 mg/ml -1.4 -1.1 -0.5 +0.2 +0.0
stress R2A with Polymyxin B sulfate 0.003 mg/ml -1.3 -1.3 -0.7 +0.5 +0.1
phage P. simiae ORA MOI 1 +0.3 -1.2 -1.2 -0.5 +0.0
seeds Growth on radish seeds for 72 hours +0.2 -0.8 -0.9 -0.3 -0.7
phage P. simiae ORA MOI 0.1 +0.8 -2.2 -0.6 -0.3 -0.0
supernatant control Vogels_fungal_media 0.1X -0.9 -0.6 -0.8 -0.2 +0.3
phage Wcs_1 +0.3 -0.9 -0.6 -0.6 -0.4
phage P. simiae ORA MOI 10 -1.2 +0.0 -1.5 +0.6 +0.1
phage P. simiae OR1 MOI 0.1 +0.0 +0.5 -1.6 -0.9 +0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.3 -0.7 +0.3 +0.6 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -1.6 -0.3 +0.5 +0.4 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.4 -1.0 -1.1 +0.4 +1.4
soil soil sample 6; outgrowth in LB +1.0 -0.9 +0.4 -0.1 -0.4
stress 1-ethyl-3-methylimidazolium acetate 35 mM -1.5 +1.3 +0.4 -0.1 +0.0
phage P. simiae Grant Run MOI 0.1 +1.1 -0.2 -1.1 +0.1 +0.3
stress Benzalkonium Chloride 0.012 mg/ml +1.0 +1.3 +0.2 -0.5 +0.1
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