Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_26320	PS417_26325	PS417_26330	PS417_26335	PS417_26340
stress	Paraquat dichloride 0.002 mg/ml	+0.2	+1.0	+2.0	-5.5	-3.2
phage	P. simiae OR Antrim MOI 1	-0.2	-0.2	+0.1	-3.7	-0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.1	-0.0	+0.0	-2.3	-1.3
phage	P. simiae ORA MOI 0.1	-0.3	+0.1	-0.1	-0.5	-2.3
liquid stress	80% Methanol 2 mM; liquid stress	-0.1	+0.1	+0.0	-2.5	-0.4
stress	Choline chloride 300 mM	+0.1	-0.3	-0.4	-0.8	-1.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5	-0.4	-0.4	-0.7	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.2	-0.3	-0.6	-1.3	-0.6
seeds	Growth on radish seeds for 72 hours	-0.5	+0.2	-0.4	-1.1	-0.8
solid stress	Fraxetin 3 mM; solid stress	+0.1	-0.5	-0.2	-1.4	-0.5
phage	JP1 MOI 10	-0.1	-0.1	+0.5	-1.7	-1.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.3	+0.4	+0.0	-1.3	-1.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.0	-0.4	+0.4	-1.1	-1.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.3	+0.3	+0.2	-0.9	-1.6
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.2	+0.2	+0.4	-1.4	-1.0
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	+0.2	-0.3	-0.4	-1.6	+0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.1	+0.0	+0.8	-1.4	-1.1
phage	P. simiae ORA MOI 0.1	+0.1	-0.1	+0.0	+0.8	-2.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	-0.6	-0.2	-1.4	+0.8
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.2	+0.3	+0.5	-1.4	-0.8
stress	Paraquat dichloride 0.008 mg/ml	+0.3	+2.4	+4.4	-4.6	-3.4
stress	Thallium(I) acetate 0.0625 mg/ml	+0.5	+2.1	+3.3	-3.5	-3.0
stress	1-ethyl-3-methylimidazolium acetate 35 mM	-0.2	+0.1	-0.2	-1.5	+1.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.4	-0.3	+0.8	-1.1	-0.2
soil	soil sample 5; outgrowth in LB	+1.3	+0.9	+0.0	-0.1	-0.9
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.8	+1.3	+0.9	-0.3	-0.3
soil	soil sample 6; outgrowth in LB	+1.2	+1.0	+0.1	+1.0	-0.9
soil	soil sample 7; outgrowth in LB	+0.9	+0.6	+0.4	+0.5	+0.4
root	root sample 6; outgrowth in LB	+1.4	+1.2	+0.4	+0.5	-0.4
soil	soil sample 4; outgrowth in LB	+2.5	+2.3	+0.1	-1.0	-0.2