Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_26280	PS417_26285	PS417_26290	PS417_26295	PS417_26300
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.9	-0.1	-0.2	-1.1	-0.6
soil	soil sample 2; outgrowth in LB	-0.1	-0.7	-0.8	-0.4	-0.2
soil	soil sample 4; outgrowth in LB	-0.2	-0.5	-0.4	-0.5	-0.5
root	root sample 6; outgrowth in LB	-0.3	+0.0	-0.0	-1.2	-0.5
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.1	-0.4	-0.3	+0.3	-1.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.6	-0.4	-0.7	-1.2	+0.1
motility	outer cut, LB soft agar motility assay	-0.5	-0.4	-0.4	+0.4	-0.5
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x	-1.0	+0.2	+0.3	-0.3	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.5	-0.4	-0.1	+0.4	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.5	+0.6	-0.4	-0.7	-0.1
soil	soil sample 7; outgrowth in LB	-1.2	-0.3	+0.4	+0.2	-0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.6	+0.2	-0.4	+0.5	-0.3
soil	soil sample 8; outgrowth in LB	-0.8	+0.6	+0.1	+0.2	-0.4
phage	JP1 MOI 10	+0.5	-0.2	-0.0	-1.1	+0.5
carbon source	RCH2_defined_glucose with MS_media 1x	-0.7	+0.1	+0.1	+0.8	-0.4
stress	Doxycycline hyclate 0.001 mg/ml	+0.3	-0.6	+0.9	-0.3	-0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	+0.2	+0.3	-0.8	-0.2
agar plate interaction control	Taped volatile agar plate with no fungus	-0.4	-0.2	+0.3	+0.8	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	-0.1	+0.2	+0.6	-0.9
phage	P. simiae OR Antrim MOI 1	+0.7	-0.4	+0.7	-0.3	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	+0.3	-0.1	+0.7	+0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5	+0.7	+0.0	+1.0	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.5	+0.2	+0.8	+0.7	-0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	-0.2	+0.4	+1.1	-0.4
phage	P. simiae OR1 MOI 0.1	+0.5	+0.3	-0.7	+0.7	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.2	-0.1	+1.9	+0.4	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.3	+0.2	+0.9	+0.3	+0.6
solid stress	80% Methanol 1 mM; solid stress	+1.0	+0.4	-0.1	+0.3	+0.2
carbon source	L-Valine (C)	+1.8	-0.3	+0.0	+0.6	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+1.7	+0.3	-0.1	+0.7	+0.0