Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_26270	PS417_26275	PS417_26280	PS417_26285	PS417_26290
phage	Wcs_1	-1.3	-0.8	-0.5	-0.3	+0.1
agar plate interaction control	Taped volatile agar plate with no fungus	-0.7	-0.8	-0.4	-0.2	+0.3
motility	inner cut, LB soft agar motility assay	-1.0	+0.4	-0.6	-0.1	-0.4
supernatant control	Vogels_fungal_media 0.1X	-0.6	-0.4	-0.8	+0.5	-0.3
soil	soil sample 4; outgrowth in LB	+0.4	-0.8	-0.2	-0.5	-0.4
motility	outer cut, LB soft agar motility assay	-0.4	+0.5	-0.7	-0.6	-0.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.6	+0.6	-0.6	+0.2	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.1	-0.1	-0.5	-0.3	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.1	-0.4	-0.9	-0.1	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.1	+0.8	-0.3	+0.0	+0.2
soil	soil sample 7; outgrowth in LB	+0.8	+0.7	-1.2	-0.3	+0.4
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	+0.7	-0.3	-0.7	+0.1	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.5	-0.1	-0.7	+0.3	-0.1
seeds	Growth on radish seeds for 72 hours	-0.4	+1.3	-0.3	+0.3	+0.3
stress	Doxycycline hyclate 0.001 mg/ml	+0.2	+0.4	+0.3	-0.6	+0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.4	-0.3	+1.7	+0.3	-0.1
seeds	Growth on radish seeds for 24 hours	-0.6	+1.2	-0.0	+0.2	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.6	+0.1	-0.5	+0.2	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.9	+0.5	-0.9	+0.4	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	+1.3	-0.3	+0.0	-0.2
phage	Wcs_0.1	+1.0	+0.3	+0.1	-0.4	+0.4
carbon source	L-Valine (C)	+0.0	-0.1	+1.8	-0.3	+0.0
phage	P. simiae OR Antrim MOI 1	+0.1	+0.3	+0.7	-0.4	+0.7
phage	P. simiae OR1 MOI 0.1	+0.3	+1.3	+0.5	+0.3	-0.7
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.7	+0.8	-0.3	+0.3	+0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.9	+1.2	+0.0	-0.0	-0.2
solid stress	80% Methanol 1 mM; solid stress	+0.6	+0.1	+1.0	+0.4	-0.1
solid stress	Fraxetin 1 mM; solid stress	+0.4	+0.7	+0.7	+0.4	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.2	+0.7	-0.2	-0.1	+1.9
phage	P. simiae ORA MOI 0.1	+1.3	+0.1	+0.2	+0.4	+0.3