Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_02605 and PS417_02610 are separated by 157 nucleotidesPS417_02610 and PS417_02615 overlap by 1 nucleotidesPS417_02615 and PS417_02620 are separated by 46 nucleotidesPS417_02620 and PS417_02625 are separated by 332 nucleotides PS417_02605: PS417_02605 - IMP dehydrogenase, at 593,309 to 596,599 _02605 PS417_02610: PS417_02610 - hypothetical protein, at 596,757 to 599,243 _02610 PS417_02615: PS417_02615 - transglutaminase, at 599,243 to 600,133 _02615 PS417_02620: PS417_02620 - hypothetical protein, at 600,180 to 600,362 _02620 PS417_02625: PS417_02625 - azurin, at 600,695 to 601,141 _02625
Group Condition PS417_02605 PS417_02610 PS417_02615 PS417_02620 PS417_02625
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -0.7 -0.6 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -1.0 -0.6 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -1.2 -0.1 N.D. N.D.
phage JP1 MOI 10 -0.1 -0.3 -1.1 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -0.8 -0.6 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -0.6 -0.4 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -0.6 -0.6 N.D. N.D.
supernatant control Vogels_fungal_media 0.1X -0.2 -0.2 -0.8 N.D. N.D.
nitrogen source Urea (N) -0.1 -0.4 -0.6 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 -0.6 -0.6 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -0.5 -0.5 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.0 -0.7 -0.4 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 -0.9 +0.1 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 -0.3 -0.6 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.2 -0.4 -0.6 N.D. N.D.
liquid stress Scopoletin 3 mM; liquid stress +0.1 +0.2 -0.8 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 -0.9 +0.0 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.0 +0.5 -0.7 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 +0.5 +0.2 N.D. N.D.
carbon source 2'-Deoxyinosine 5 mM (C) +0.2 -0.3 +0.5 N.D. N.D.
phage P. simiae ORA MOI 10 -0.2 +0.2 +0.6 N.D. N.D.
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 -0.2 +0.5 N.D. N.D.
motility_chemotaxis Method=Plug_approach; Chemical=None; Chemical_conc=0mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.1 +0.4 +0.5 N.D. N.D.
rhizosphere rhizosphere sample 1; outgrowth in LB -0.3 +0.8 +0.3 N.D. N.D.
seeds Growth on radish seeds for 24 hours +0.1 -0.1 +0.9 N.D. N.D.
phage P. simiae Grant Run MOI 0.1 +0.0 +0.5 +0.5 N.D. N.D.
stress Gentamicin 0.008 mg/ml +0.1 +0.4 +0.6 N.D. N.D.
seeds Growth on radish seeds for 72 hours +0.1 +0.5 +0.5 N.D. N.D.
phage P. simiae OR1 MOI 0.1 +0.2 +0.8 +1.0 N.D. N.D.
seeds Growth on radish seeds for 72 hours +0.6 -0.0 +1.8 N.D. N.D.
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