Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_26215 and PS417_26220 are separated by 282 nucleotidesPS417_26220 and PS417_26225 are separated by 771 nucleotidesPS417_26225 and PS417_26230 are separated by 10 nucleotidesPS417_26230 and PS417_26235 overlap by 1 nucleotides PS417_26215: PS417_26215 - ferredoxin, at 5,664,594 to 5,665,694 _26215 PS417_26220: PS417_26220 - Rieske (2Fe-2S) protein, at 5,665,977 to 5,667,272 _26220 PS417_26225: PS417_26225 - electron transfer flavoprotein subunit beta, at 5,668,044 to 5,668,814 _26225 PS417_26230: PS417_26230 - electron transfer flavoprotein subunit alpha, at 5,668,825 to 5,670,045 _26230 PS417_26235: PS417_26235 - (Fe-S)-binding protein, at 5,670,045 to 5,671,985 _26235
Group Condition PS417_26215 PS417_26220 PS417_26225 PS417_26230 PS417_26235
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.7 -0.6 -3.7 -3.9 -2.8
root root sample 6; outgrowth in LB -1.8 -1.2 -1.9 -3.2 -2.5
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.1 -0.4 -2.8 -2.3 -3.3
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.0 -1.0 -2.9 -2.8 -1.7
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 -1.1 -3.1 -2.3 -2.2
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 -1.0 -1.5 -2.6 -2.6
soil soil sample 5; outgrowth in LB -0.8 -0.6 -1.7 -1.7 -2.7
rhizosphere rhizosphere sample 1; outgrowth in LB -0.9 -0.9 -3.3 -1.0 -1.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.2 -0.3 -2.4 -1.9 -1.6
soil soil sample 4; outgrowth in LB -0.6 -3.0 -0.7 -1.1 -1.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 -0.6 -2.7 -1.8 -1.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 -1.9 -1.5 -0.5 -1.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -1.2 -0.9 -2.1 -1.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 +0.2 -2.2 -2.1 -1.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -0.2 -2.1 -1.3 -1.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -1.1 -2.5 -0.8 -1.1
soil soil sample 7; outgrowth in LB -0.7 -1.8 -0.4 -1.7 -1.0
soil soil sample 8; outgrowth in LB -0.5 -0.5 -0.9 -1.9 -1.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.0 +0.3 -2.6 -1.3 -1.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -0.7 -1.5 -1.6 -1.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 +0.2 -1.8 -1.3 -1.7
rhizosphere rhizosphere sample 8; outgrowth in LB -0.6 -0.2 -1.0 -1.7 -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 +0.1 -0.9 -0.9 -1.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.0 +0.2 -0.9 -1.4 -1.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 +0.4 -1.2 -0.7 -1.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +1.4 -1.3 -1.4 -1.6
soil soil sample 2; outgrowth in LB -0.1 +0.7 -0.3 -1.4 -1.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 +0.9 -1.2 -0.6 -1.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 +1.5 +0.3 -1.6 -0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.9 +1.3 +0.3 -0.5 +1.0
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