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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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500 nt
GFF5112 and GFF5113 are separated by 15 nucleotides
GFF5113 and GFF5114 are separated by 89 nucleotides
GFF5114 and GFF5115 are separated by 17 nucleotides
GFF5115 and GFF5116 overlap by 1 nucleotides
GFF5112 - Glutathione peroxidase (EC 1.11.1.9) @ Thioredoxin peroxidase (EC 1.11.1.15), at 213,828 to 214,316
GFF5112
GFF5113 - hypothetical protein, at 214,332 to 214,775
GFF5113
GFF5114 - Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF, at 214,865 to 216,097
GFF5114
GFF5115 - Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE, at 216,115 to 217,233
GFF5115
GFF5116 - Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD, at 217,233 to 218,735
GFF5116
Group
Condition
GFF5112
GFF5113
GFF5114
GFF5115
GFF5116
complex community
Community=arabino-guar; Passage=4
+0.1
-0.8
-0.3
-1.1
-0.4
complex community
Community=guar; Passage=4
-0.2
-0.0
-0.1
-1.3
-0.2
complex community
Community=arabino-guar; Passage=4
-0.2
+0.4
-0.6
-0.4
-0.9
complex community
Community=arabino-guar; Passage=4
+0.2
+0.1
-0.3
-0.8
-0.8
complex community
Community=guar; Passage=4
+0.3
-0.2
-0.4
-0.5
-0.6
complex community
Community=Kojac gum; Passage=4
-0.5
-0.6
-0.1
-0.0
+0.3
complex community
Community=Locust bean gum; Passage=4
-0.1
-0.3
-0.3
-0.2
+0.0
complex community
Community=Locust bean gum; Passage=4
+0.5
+0.0
-0.5
-0.5
-0.3
no phage control
no phage control
+0.1
-0.4
-0.0
-0.3
-0.1
complex community
Community=Locust bean gum; Passage=1
+0.2
-0.2
-0.1
-0.3
-0.1
complex community
Community=Kojac gum; Passage=1
+0.2
-0.4
-0.0
-0.0
-0.1
complex community
Community=arabino-guar; Passage=4
+0.3
+0.1
-0.3
+0.1
-0.6
vitamin
M9 with Supernatant from Cyptococcus
-0.3
+0.0
+0.2
-0.1
-0.2
complex community
Community=Locust bean gum; Passage=4
+0.2
+0.1
-0.1
-0.6
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.2
+0.3
-0.2
-0.1
-0.2
no phage control
no phage control
-0.2
+0.4
-0.1
-0.1
-0.0
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.3
-0.3
+0.0
+0.0
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.4
-0.3
-0.0
-0.0
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.4
-0.3
-0.0
+0.1
+0.0
complex community
Community=guar; Passage=4
+0.3
+0.8
-0.4
-0.4
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.4
-0.0
-0.2
+0.1
+0.0
vitamin
M9 with Supernatant from Cyptococcus
+0.3
+0.1
+0.0
+0.2
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.1
+0.4
-0.0
-0.1
+0.1
phage
phage_bap4
+0.3
+0.3
+0.1
-0.0
-0.1
complex community
Community=guar; Passage=4
+0.4
+0.9
-0.5
+0.5
-0.6
phage
phage_bap4
+0.2
-0.1
+0.2
+0.2
+0.1
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.7
+0.2
-0.3
+0.1
-0.1
phage
phage_bap4
+0.2
+0.2
+0.1
+0.2
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.3
+0.4
+0.1
+0.1
-0.1
complex community
Community=Locust bean gum; Passage=4
+1.1
+0.3
-0.4
+0.1
+0.0
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