Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF5109 and GFF5110 are separated by 178 nucleotidesGFF5110 and GFF5111 are separated by 64 nucleotidesGFF5111 and GFF5112 are separated by 9 nucleotidesGFF5112 and GFF5113 are separated by 15 nucleotides GFF5109 - Alanine racemase (EC 5.1.1.1), at 210,277 to 211,380 GFF5109 GFF5110 - Putative transmembrane protein, at 211,559 to 212,863 GFF5110 GFF5111 - Permease of the drug/metabolite transporter (DMT) superfamily, at 212,928 to 213,818 GFF5111 GFF5112 - Glutathione peroxidase (EC 1.11.1.9) @ Thioredoxin peroxidase (EC 1.11.1.15), at 213,828 to 214,316 GFF5112 GFF5113 - hypothetical protein, at 214,332 to 214,775 GFF5113
Group Condition GFF5109 GFF5110 GFF5111 GFF5112 GFF5113
complex community Community=Locust bean gum; Passage=4 N.D. N.D. -0.6 -0.1 -0.3
complex community Community=Kojac gum; Passage=4 N.D. N.D. +0.3 -0.5 -0.6
no phage control no phage control N.D. N.D. -0.3 +0.1 -0.4
complex community Community=arabino-guar; Passage=4 N.D. N.D. +0.2 +0.1 -0.8
complex community Community=Kojac gum; Passage=1 N.D. N.D. -0.0 +0.2 -0.4
complex community Community=guar; Passage=4 N.D. N.D. -0.4 +0.3 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL N.D. N.D. -0.2 +0.4 -0.3
complex community Community=Locust bean gum; Passage=1 N.D. N.D. -0.2 +0.2 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL N.D. N.D. +0.1 +0.1 -0.3
no phage control no phage control N.D. N.D. +0.2 +0.1 -0.3
complex community Community=arabino-guar; Passage=4 N.D. N.D. -0.1 -0.2 +0.4
vitamin M9 with Supernatant from Cyptococcus N.D. N.D. +0.4 -0.3 +0.0
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL N.D. N.D. -0.2 +0.1 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL N.D. N.D. -0.2 +0.2 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL N.D. N.D. +0.2 +0.4 -0.3
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL N.D. N.D. +0.4 +0.3 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL N.D. N.D. -0.1 +0.1 +0.4
vitamin M9 with Supernatant from Cyptococcus N.D. N.D. +0.2 +0.3 +0.1
no phage control no phage control N.D. N.D. +0.4 -0.2 +0.4
complex community Community=arabino-guar; Passage=4 N.D. N.D. +0.4 +0.2 +0.1
complex community Community=arabino-guar; Passage=4 N.D. N.D. +0.4 +0.3 +0.1
phage phage_bap4 N.D. N.D. +0.2 +0.3 +0.3
vitamin M9 with Supernatant from Cyptococcus N.D. N.D. +0.4 +0.5 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. N.D. +0.1 +0.3 +0.4
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL N.D. N.D. +0.0 +0.7 +0.2
complex community Community=Locust bean gum; Passage=4 N.D. N.D. +0.7 +0.2 +0.1
complex community Community=Locust bean gum; Passage=4 N.D. N.D. +0.5 +0.5 +0.0
complex community Community=guar; Passage=4 N.D. N.D. +0.2 +0.3 +0.8
complex community Community=guar; Passage=4 N.D. N.D. +0.0 +0.4 +0.9
complex community Community=Locust bean gum; Passage=4 N.D. N.D. +0.8 +1.1 +0.3
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