Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_26170	PS417_26175	PS417_26180	PS417_26185	PS417_26190
root	root sample 6; outgrowth in LB	+0.2	-1.7	-1.2	-1.7	-1.2
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.2	-1.9	-0.7	-0.8	-1.2
soil	soil sample 6; outgrowth in LB	+0.2	-2.8	-0.5	-0.5	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-3.3	-0.2	-0.2	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.4	-1.4	-0.2	-0.3	-0.8
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	+0.0	-1.1	-0.6	-0.4	-0.9
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	-1.0	-0.3	-0.6	-0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	-1.9	-0.1	+0.4	-0.9
solid stress	Fraxetin 2 mM; solid stress	+0.2	-2.4	+0.1	-0.2	-0.1
motility	outer cut, LB soft agar motility assay	-0.3	-1.8	+0.1	-0.2	-0.2
phage	P. simiae ORA MOI 10	+0.2	-1.8	-0.3	+0.0	-0.6
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4	-1.5	-0.5	-0.2	-0.5
phage	P. simiae OR1 MOI 0.1	+0.3	-2.5	-0.3	+0.1	+0.3
carbon source	L-Valine (C)	+0.3	-1.9	+0.0	+0.2	-0.4
soil	soil sample 5; outgrowth in LB	+0.3	-1.4	-0.2	+0.5	-0.6
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	-1.6	+0.3	+0.0	-0.2
phage	P. simiae OR Antrim MOI 0.1	+0.5	-1.9	+0.3	+0.5	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+1.3	+0.2	-1.3	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	-1.3	+0.2	+0.8	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	-1.4	+0.1	+0.1	+1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.3	+1.7	-0.1	-0.5	+0.1
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.0	+2.5	-0.3	-0.6	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.0	-0.9	-0.1	+1.2	+1.0
seeds	Growth on radish seeds for 72 hours	-0.0	+2.8	-0.1	-0.2	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+2.1	+0.3	+0.1	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+1.8	-0.2	+0.5	-0.2
supernatant control	Vogels_fungal_media 0.1X	+0.2	+2.2	+0.2	-0.1	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+2.0	+0.0	+0.5	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	+2.4	+0.2	+0.3	+0.3
phage	P. simiae ORA MOI 0.1	+0.2	+1.8	+0.2	+0.2	+0.7