Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_26155	PS417_26160	PS417_26165	PS417_26170	PS417_26175
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	-0.5	+0.2	+0.2	-3.3
phage	P. simiae OR1 MOI 0.1	-1.1	-0.4	-0.2	+0.3	-2.5
soil	soil sample 6; outgrowth in LB	-1.5	+0.1	+0.2	+0.2	-2.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.4	-0.1	-0.5	-0.4	-1.4
phage	P. simiae OR Antrim MOI 10	-0.7	-0.6	-0.1	-0.2	-1.1
phage	P. simiae Grant Run MOI 10	-0.3	-0.2	-0.5	+0.2	-1.6
phage	P. simiae OR Antrim MOI 0.1	+0.0	-0.9	-0.2	+0.5	-1.9
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.4	+0.1	+0.2	+0.5	-1.6
carbon source	2-Deoxy-D-Ribose (C)	-0.4	-0.3	+0.3	+0.1	-1.8
solid stress	Fraxetin 2 mM; solid stress	+0.2	+0.2	+0.1	+0.2	-2.4
phage	P. simiae ORA MOI 10	-0.6	+0.2	+0.4	+0.2	-1.8
soil	soil sample 5; outgrowth in LB	-0.4	-0.7	+0.6	+0.3	-1.4
root	root sample 6; outgrowth in LB	-0.5	+0.5	-0.1	+0.2	-1.7
carbon source	L-Valine (C)	-0.4	+0.2	+0.4	+0.3	-1.9
motility	outer cut, LB soft agar motility assay	+0.3	+0.4	+0.3	-0.3	-1.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.9	+0.0	+0.3	-0.5	-1.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.7	+0.2	-0.7	-0.8	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7	-0.0	+0.5	+0.4	-1.4
phage	JP1 MOI 10	-0.8	-0.4	+0.4	+0.3	+0.9
phage	P. simiae ORA MOI 0.1	-0.5	-0.3	-0.3	+0.2	+1.8
supernatant control	Vogels_fungal_media 0.1X	-0.8	-0.8	+0.2	+0.2	+2.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.6	+0.7	+0.5	+0.2	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	-0.4	+0.3	-0.1	+2.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.3	+0.2	-0.3	+2.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.2	+0.2	-0.4	-0.3	+1.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	-0.3	+0.1	-0.2	+2.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.2	+0.4	+0.2	+1.8
phage	P. simiae ORA MOI 1	+1.6	+0.7	-0.4	+0.1	+0.1
seeds	Growth on radish seeds for 72 hours	-0.9	+0.7	+0.3	-0.0	+2.8
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	+0.6	+0.3	-0.0	+2.5