Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_02590	PS417_02595	PS417_02600	PS417_02605	PS417_02610
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.1	+0.2	-0.3	-1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	+0.2	-0.2	-0.2	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.2	+0.0	-0.4	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.1	+0.2	-0.4	-0.6
motility	outer cut, LB soft agar motility assay	-0.4	-0.2	+0.3	-0.1	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.4	+0.3	-0.1	-1.0
motility	outer cut, LB soft agar motility assay	-0.5	-0.4	-0.0	-0.2	+0.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.4	+0.4	-0.6	+0.1	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.2	+0.5	-0.1	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.6	+0.6	+0.2	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.3	+0.2	-0.1	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.4	+0.6	+0.1	-0.4
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.1	+0.6	-1.0	+0.0	+0.0
stress	methylglyoxal 0.032 vol%	+0.2	-0.5	+0.4	+0.0	-0.3
phage	P. simiae OR1 MOI 0.1	+0.0	-0.2	-0.9	+0.2	+0.8
soil	soil sample 5; outgrowth in LB	+0.1	+0.3	-0.7	+0.1	+0.3
motility	inner cut, LB soft agar motility assay	-0.5	-0.1	+0.5	+0.1	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	+0.2	+0.5	+0.2	-0.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	+0.4	-0.2	-0.2	+0.4
phage	P. simiae ORA MOI 1	-0.1	+0.0	-0.5	+0.4	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.2	-0.3	+1.1	-0.1	-0.5
soil	soil sample 2; outgrowth in LB	-0.1	-0.3	+0.7	+0.1	-0.0
phage	P. simiae Grant Run MOI 0.1	-0.0	+0.4	-0.4	+0.0	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	+0.3	+0.5	+0.0	-0.4
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.1	+0.2	+0.0	-0.3	+0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.3	-0.1	+0.5	+0.1	+0.4
seeds	Growth on radish seeds for 72 hours	+0.2	+0.6	-0.1	+0.3	+0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+0.5	+0.9	+0.1	+0.2
seeds	Growth on radish seeds for 72 hours	+0.2	+0.5	+0.5	+0.6	-0.0
seeds	Growth on radish seeds for 72 hours	+0.9	+0.6	-0.1	+0.1	+0.5