Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_26105	PS417_26110	PS417_26115	PS417_26120	PS417_26125
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	-0.1	-0.4	-0.9	-0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	+0.2	-0.4	-1.4	-0.0
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.0	+0.4	-0.1	-1.8	-0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	-0.2	+0.8	-1.7	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.9	+0.1	+0.5	-2.9	-0.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.4	-0.1	+0.3	-1.0	-0.3
seeds	Growth on radish seeds for 72 hours	-0.3	-0.1	+0.7	-2.1	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.6	+0.0	-0.6	+0.4	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.1	+0.3	-1.2	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	-0.1	+0.6	-1.3	+0.3
nophagecontrol	Only library	-0.2	+0.2	+0.1	-1.3	+0.5
phage	JP1 MOI 1	+0.4	+0.3	-1.0	-0.6	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.3	-0.0	+0.6	-1.3	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.2	+0.1	+0.1	-1.0	+0.7
carbon source	L-Valine (C)	-0.6	+0.1	-0.7	-0.6	+1.4
stress	Nalidixic 0.015 mg/ml	-0.4	+0.1	-0.5	+1.2	-0.2
supernatant control	Vogels_fungal_media 0.1X	+0.3	+0.0	-0.6	+0.7	+0.5
carbon source	L-Valine (C)	+0.3	+0.1	+0.1	-0.9	+1.5
soil	soil sample 5; outgrowth in LB	+0.3	+0.4	+0.7	-0.6	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	+0.1	+0.2	+0.1	+1.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	-0.1	+1.8	-0.2	-0.3
exudates	RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 1x	+0.1	+0.0	+0.4	+1.2	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-0.1	+0.6	-0.6	+1.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.3	+0.7	+0.0	+1.0
phage	JP1 MOI 0.1	-0.0	+0.3	-0.3	+1.5	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.1	+0.0	+0.6	+0.8	+0.6
phage	P. simiae Grant Run MOI 0.1	+0.4	-0.0	+0.1	+1.0	+0.7
phage	P. simiae ORA MOI 0.1	+0.5	-0.1	+0.5	+1.4	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	+0.5	+1.8	+0.5	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.2	+0.2	+0.3	+3.6	-0.3