Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_26070	PS417_26075	PS417_26080	PS417_26085	PS417_26095
stress	methylglyoxal 0.032 vol%	-0.4	-0.4	-0.1	-1.0	-1.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	-0.1	-0.2	-0.9	+0.2
phage	P. simiae OR Antrim MOI 1	-0.6	-0.4	-0.1	-0.3	-0.3
nophagecontrol	Only library	+0.1	-0.1	-0.2	-1.3	+0.1
phage	JP1 MOI 1	-0.2	-0.4	-0.0	-0.9	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	-0.8	-0.2	+0.1	-0.3	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.8	-0.2	+0.1	+0.2	-0.3
phage	P. simiae Grant Run MOI 10	-0.7	-0.4	-0.1	-0.0	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	-0.1	+0.1	-0.7	-0.5
agar plate interaction control	Taped volatile agar plate with no fungus	+0.5	-0.0	+0.0	-1.1	-0.0
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-0.2	+0.5	-0.3	-0.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.4	-0.0	-0.1	-0.6	+0.6
phage	JP1 MOI 10	-0.6	-0.3	-0.1	+0.4	+0.1
ecofab	LB 0.5x in EcoFAB_3.5mL	+0.0	-0.0	+0.1	-1.0	+0.5
motility	outer cut, LB soft agar motility assay	-0.5	+0.2	+0.1	+0.3	-0.5
phage	Wcs_1	+0.1	-0.4	-0.1	+0.6	-0.6
soil	soil sample 8; outgrowth in LB	+0.4	+0.1	+0.4	-0.7	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.5	-0.3	+0.8	-0.4	+0.2
phage	P. simiae OR Antrim MOI 10	-0.8	+0.0	-0.0	+0.6	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-0.2	+0.2	-0.6	+0.3
carbon source	L-Valine (C)	-0.6	-0.1	-0.2	+0.5	+0.4
phage	JP1 MOI 10	+0.5	+0.1	-0.0	-0.7	+0.2
phage	P. simiae OR1 MOI 0.1	+0.4	+0.1	+0.0	-1.2	+0.8
root	root sample 6; outgrowth in LB	-0.7	+0.0	+0.4	+0.3	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	+0.0	-0.2	+0.4	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.7	+0.0	+0.5	+0.3	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.4	+0.3	+0.6	+0.2	+0.1
soil	soil sample 2; outgrowth in LB	-0.1	+0.1	+0.4	+0.7	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+0.1	+0.1	+1.3	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	+0.4	+0.2	+0.3	+0.2