Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_26050 and PS417_26055 are separated by 245 nucleotidesPS417_26055 and PS417_26060 overlap by 4 nucleotidesPS417_26060 and PS417_26065 are separated by 100 nucleotidesPS417_26065 and PS417_26070 overlap by 4 nucleotides PS417_26050: PS417_26050 - response regulator, at 5,629,217 to 5,629,663 _26050 PS417_26055: PS417_26055 - cyclic nucleotide-binding protein, at 5,629,909 to 5,631,831 _26055 PS417_26060: PS417_26060 - DNA polymerase III subunit epsilon, at 5,631,828 to 5,632,535 _26060 PS417_26065: PS417_26065 - RNA polymerase sigma factor, at 5,632,636 to 5,633,154 _26065 PS417_26070: PS417_26070 - amino acid ABC transporter substrate-binding protein, at 5,633,151 to 5,634,146 _26070
Group Condition PS417_26050 PS417_26055 PS417_26060 PS417_26065 PS417_26070
soil soil sample 5; outgrowth in LB -2.3 +0.3 -0.0 -0.3 +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 +0.6 -1.2 -0.5 -0.4
phage P. simiae Grant Run MOI 10 -0.9 +0.8 -1.8 +0.5 -0.7
soil soil sample 3; outgrowth in LB -0.9 +0.4 -1.2 +0.0 +0.1
phage P. simiae Grant Run MOI 10 -1.2 +0.9 -0.7 -0.3 -0.1
phage P. simiae OR Antrim MOI 10 -0.8 +0.8 -0.0 -0.5 -0.8
phage JP1 MOI 10 -3.0 +1.3 -0.0 -0.1 +0.5
phage P. simiae ORA MOI 0.1 -1.3 +0.5 -0.1 +0.4 -0.6
phage JP1 MOI 10 -1.1 +1.1 -0.2 -0.2 -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.8 -0.1 -2.0 +0.4 +0.0
phage JP1 MOI 1 -0.9 +1.2 -0.5 -0.4 -0.2
phage P. simiae ORA MOI 10 -1.3 +0.6 +0.4 -0.4 -0.1
phage P. simiae OR Antrim MOI 0.1 -1.4 +0.8 +0.4 -0.2 -0.0
agar plate interaction control Taped volatile agar plate with no fungus +0.8 +0.5 -1.2 -1.0 +0.5
phage P. simiae OR1 MOI 0.1 -0.3 -0.4 +1.0 -0.9 +0.4
phage P. simiae OR Antrim MOI 0.1 -1.0 +0.8 +0.4 -0.2 -0.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.1 +0.4 +0.8 -0.2 +0.1
motility outer cut, LB soft agar motility assay +1.1 -0.6 +0.6 -0.4 -0.5
phage JP1 MOI 0.1 -0.5 +1.4 +0.3 -0.4 -0.4
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.5 -0.1 +0.3 +1.2 -0.5
phage JP1 MOI 1 -0.8 +1.3 +0.7 -0.7 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.8 +0.4 -1.0 +0.3 -0.1
soil soil sample 2; outgrowth in LB -1.3 +0.7 +1.0 +0.3 -0.1
soil soil sample 6; outgrowth in LB -0.6 +0.6 +0.6 +0.5 -0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.8 +0.4 -1.1 +0.2 +0.4
soil soil sample 8; outgrowth in LB -0.9 +0.8 +1.0 -0.0 +0.4
soil soil sample 7; outgrowth in LB -0.9 +0.7 +1.6 +0.1 -0.2
rhizosphere rhizosphere sample 2; outgrowth in LB +0.3 +0.2 +2.8 -0.4 +0.0
root root sample 6; outgrowth in LB +1.4 +0.2 +1.8 +0.5 -0.7
rhizosphere rhizosphere sample 1; outgrowth in LB +0.6 +0.2 +2.8 +0.4 -0.4
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