Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_26005	PS417_26010	PS417_26015	PS417_26020	PS417_26025
nitrogen source	Ammonium chloride (N)	-2.9	+0.0	-0.1	-0.1	+0.0
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-2.9	-0.1	-0.3	+0.1	+0.2
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-3.0	-0.1	+0.3	-0.1	+0.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-2.9	+0.1	-0.0	-0.1	+0.1
nitrogen source	nitrate (N)	-2.8	+0.0	-0.2	+0.1	+0.1
nitrogen source	Adenine (N)	-2.6	+0.3	+0.0	-0.0	-0.5
phage	FRSphage	-2.1	-0.0	-0.4	-0.1	-0.1
carbon source	L-Leucine (C)	-2.8	+0.2	+0.1	-0.1	+0.1
carbon source	L-Valine (C)	-2.2	-0.2	-0.2	+0.2	-0.2
phage moi 100	Time6-phageFRS	-2.3	-0.2	+0.1	-0.0	-0.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-2.6	+0.2	-0.1	-0.1	+0.1
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.8	-1.0	-0.3	+0.0	-0.1
carbon source	L-Leucine (C)	-2.6	+0.3	+0.3	-0.2	-0.0
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-2.7	+0.1	+0.3	+0.1	+0.1
nitrogen source	Cytidine (N)	-1.3	-0.1	-0.4	-0.2	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.9	-0.7	-0.2	-0.1	+0.1
no phage control	Time6-nophage	-1.8	+0.1	-0.3	+0.1	+0.1
nitrogen source	Urea (N)	-1.8	-0.1	+0.0	+0.0	+0.0
no phage control	no phage control	-1.6	+0.2	+0.1	-0.3	+0.1
carbon source	L-Lactate (C)	-1.3	+0.2	-0.1	-0.1	-0.2
carbon source	D-Gluconic Acid (C)	-1.5	+0.3	+0.0	-0.1	-0.1
soil	soil sample 5; outgrowth in LB	+0.2	-1.8	-0.2	+0.2	+0.1
carbon source	D,L-Lactate (C)	-1.3	+0.7	-0.4	-0.2	-0.1
carbon source	D-Gluconic Acid (C)	-1.5	+0.1	+0.2	+0.0	+0.0
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	+0.4	-0.2	-0.0	-1.5	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.9	-0.8	+0.0	+0.6	+0.2
seeds	Growth on radish seeds for 24 hours	-0.4	-1.0	+0.1	+0.2	+0.3
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	+0.3	+1.0	-0.2	-2.1	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.8	-0.3	-0.4	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.2	+1.3	-0.3	-0.1	-0.3