Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_26000 and PS417_26005 are separated by 69 nucleotidesPS417_26005 and PS417_26010 are separated by 92 nucleotidesPS417_26010 and PS417_26015 are separated by 58 nucleotidesPS417_26015 and PS417_26020 are separated by 78 nucleotides PS417_26000: PS417_26000 - 8-amino-7-oxononanoate synthase, at 5,617,336 to 5,618,517 _26000 PS417_26005: PS417_26005 - biotin synthase, at 5,618,587 to 5,619,642 _26005 PS417_26010: PS417_26010 - amidophosphoribosyltransferase, at 5,619,735 to 5,620,472 _26010 PS417_26015: PS417_26015 - ModE family transcriptional regulator, at 5,620,531 to 5,621,295 _26015 PS417_26020: PS417_26020 - transcriptional initiation protein Tat, at 5,621,374 to 5,623,272 _26020
Group Condition PS417_26000 PS417_26005 PS417_26010 PS417_26015 PS417_26020
nitrogen source nitrate (N) -3.5 -2.8 +0.0 -0.2 +0.1
nitrogen source Ammonium chloride (N) -3.1 -2.9 +0.0 -0.1 -0.1
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.0 -3.0 -0.1 +0.3 -0.1
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.6 -2.9 -0.1 -0.3 +0.1
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.8 -2.9 +0.1 -0.0 -0.1
nitrogen source Adenine (N) -2.3 -2.6 +0.3 +0.0 -0.0
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.1 -2.7 +0.1 +0.3 +0.1
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.8 -2.6 +0.2 -0.1 -0.1
phage moi 100 Time6-phageFRS -1.7 -2.3 -0.2 +0.1 -0.0
carbon source D-Gluconic Acid (C) -1.9 -1.5 +0.3 +0.0 -0.1
no phage control Time6-nophage -1.3 -1.8 +0.1 -0.3 +0.1
carbon source L-Leucine (C) -0.6 -2.8 +0.2 +0.1 -0.1
carbon source D-Gluconic Acid (C) -1.8 -1.5 +0.1 +0.2 +0.0
nitrogen source Urea (N) -1.2 -1.8 -0.1 +0.0 +0.0
nitrogen source Cytidine (N) -0.8 -1.3 -0.1 -0.4 -0.2
carbon source L-Leucine (C) -0.7 -2.6 +0.3 +0.3 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.9 -0.9 -0.7 -0.2 -0.1
carbon source L-Valine (C) -0.4 -2.2 -0.2 -0.2 +0.2
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.5 -0.8 -1.0 -0.3 +0.0
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.9 -1.5 -0.1 +0.1 -0.0
carbon source L-Lactate (C) -1.2 -1.3 +0.2 -0.1 -0.1
carbon source D-Glucose (C) -1.2 -1.3 +0.1 +0.0 +0.1
carbon source D,L-Lactate (C) -1.0 -1.3 +0.7 -0.4 -0.2
carbon source L-Lactate (C) -1.2 -1.3 +0.1 +0.3 -0.0
carbon source D,L-Lactate (C) -1.0 -1.3 +0.3 +0.0 -0.1
carbon source D-Glucose (C) -1.0 -1.4 +0.3 -0.0 +0.0
carbon source L-Valine (C) -1.0 -1.2 -0.0 +0.3 -0.0
soil soil sample 5; outgrowth in LB -0.3 +0.2 -1.8 -0.2 +0.2
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x -0.4 +0.3 +1.0 -0.2 -2.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.2 -0.9 -0.8 +0.0 +0.6
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