Fitness for 5 genes in Pseudomonas simiae WCS417

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

500 ntPS417_25965 and PS417_25970 are separated by 90 nucleotidesPS417_25970 and PS417_25975 are separated by 260 nucleotidesPS417_25975 and PS417_25980 are separated by 257 nucleotidesPS417_25980 and PS417_25985 are separated by 106 nucleotides PS417_25965: PS417_25965 - acyl-CoA dehydrogenase, at 5,609,269 to 5,611,038 _25965 PS417_25970: PS417_25970 - diguanylate cyclase, at 5,611,129 to 5,612,418 _25970 PS417_25975: PS417_25975 - Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data), at 5,612,679 to 5,614,484 _25975 PS417_25980: PS417_25980 - pyrroloquinoline quinone biosynthesis protein PqqE, at 5,614,742 to 5,615,023 _25980 PS417_25985: PS417_25985 - dethiobiotin synthetase, at 5,615,130 to 5,615,810 _25985
Group Condition PS417_25965 PS417_25970 PS417_25975 PS417_25980 PS417_25985
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 +0.1 -1.1 N.D. -2.6
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 +0.1 -0.7 N.D. -3.2
no phage control Time6-nophage +0.1 +0.0 -0.1 N.D. -3.4
nitrogen source Ammonium chloride (N) -0.1 +0.3 -0.1 N.D. -3.1
carbon source octanoate (C) +0.3 -0.2 -3.1 N.D. -0.1
nitrogen source Adenine (N) -0.0 +0.3 -0.1 N.D. -2.9
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.0 +0.3 -0.6 N.D. -2.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.1 -0.0 -0.5 N.D. -2.3
carbon source octanoate (C) +0.2 +0.1 -2.9 N.D. +0.1
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 -0.0 -0.5 N.D. -1.8
nitrogen source nitrate (N) +0.2 +0.1 -0.2 N.D. -2.3
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 +0.5 -0.4 N.D. -2.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 +0.5 -1.4 N.D. -0.5
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 +0.6 -0.5 N.D. -1.9
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.2 -0.6 +0.4 N.D. -1.3
phage JP1 MOI 1 +0.1 +0.5 -0.9 N.D. -0.9
phage P. simiae Grant Run MOI 10 -0.1 +0.7 -1.4 N.D. -0.4
carbon source L-Valine (C) -0.0 +0.1 +0.7 N.D. -1.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 +1.0 -1.6 N.D. +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 +0.9 -0.8 N.D. -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 +1.1 -1.0 N.D. -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 +0.8 -1.2 N.D. -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 +0.2 -1.3 N.D. +0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 +1.0 -1.6 N.D. +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 +1.2 -0.5 N.D. -0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 +1.4 -1.0 N.D. -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 +1.5 -1.3 N.D. +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 +0.8 -1.0 N.D. +0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 +1.4 -0.4 N.D. +0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.2 +0.2 -0.0 N.D. +2.5
remove
PS417_25965
plot		 remove
PS417_25970
plot		 remove
PS417_25975		 remove
PS417_25980
plot		 remove
PS417_25985
plot