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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingobium sp. HT1-2
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Top 18 experiments (either direction), sorted by average fitness
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500 nt
GFF5059 and GFF5060 are separated by 319 nucleotides
GFF5060 and GFF5061 overlap by 8 nucleotides
GFF5061 and GFF5062 are separated by 39 nucleotides
GFF5062 and GFF5063 are separated by 38 nucleotides
GFF5059 - Integrase-like protein, at 5,055,861 to 5,057,063
GFF5059
GFF5060 - Truncated hemoglobins-like protein, at 5,057,383 to 5,057,862
GFF5060
GFF5061 - hypothetical protein, at 5,057,855 to 5,058,130
GFF5061
GFF5062 - Flavohemoglobin / Nitric oxide dioxygenase (EC 1.14.12.17), at 5,058,170 to 5,059,381
GFF5062
GFF5063 - 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27), at 5,059,420 to 5,060,328
GFF5063
Group
Condition
GFF5059
GFF5060
GFF5061
GFF5062
GFF5063
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.5
-0.2
+0.1
+0.4
+0.3
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.4
+0.1
+0.3
+0.3
+0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.3
+0.1
+0.2
+0.3
+0.4
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.2
-0.1
+0.6
+0.3
+0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.3
+0.3
-0.0
+0.4
+0.4
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.2
+0.0
+0.4
+0.2
+0.4
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.2
+0.3
+0.1
+0.4
+0.3
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.3
+0.1
+0.5
+0.3
+0.2
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.4
+0.3
+0.2
+0.2
+0.4
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.2
+0.3
+0.4
+0.2
+0.3
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.3
+0.1
+0.2
+0.3
+0.5
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.3
+0.2
+0.5
+0.3
+0.3
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.4
+0.2
+0.4
+0.2
+0.4
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.6
+0.0
+0.4
+0.4
+0.4
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.4
-0.1
+0.8
+0.4
+0.4
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.6
+0.1
+0.7
+0.3
+0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.4
+0.3
+0.7
+0.4
+0.3
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.3
+0.2
+0.7
+0.4
+0.5
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