Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_25900	PS417_25905	PS417_25910	PS417_25915	PS417_25920
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.1	-3.3	-2.0	-2.1	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-2.0	-3.1	-0.5	-0.8
carbon source	Gly-Glu (C)	-0.1	-0.1	-0.0	-0.3	-4.2
carbon source	Gly-Glu (C)	-0.1	-0.0	+0.1	-0.5	-3.9
soil	soil sample 5; outgrowth in LB	-0.2	-0.7	-0.2	-2.4	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.0	-1.0	-1.4	-1.2	-0.2
carbon source	Ethanol (C)	-0.5	+0.2	+0.0	-0.3	-2.5
carbon source	Ethanol (C)	+0.1	-0.3	-0.0	-0.2	-2.5
stress	L-Lysine 60 mM	-0.0	-0.8	-1.3	-0.3	-0.2
phage	P. simiae Grant Run MOI 0.1	-0.5	-0.8	-0.2	-1.1	+0.1
carbon source	2'-Deoxyinosine 5 mM (C)	+0.1	-1.3	-0.4	-0.1	-0.8
carbon source	acetate (C)	+0.1	-0.6	+0.0	-0.0	-2.0
carbon source	Fumarate (C)	-0.0	+0.1	-0.0	-0.2	-2.2
carbon source	Deoxyribonucleic from herring sperm 5 mg/mL (C)	-0.2	-0.6	-0.2	-0.1	-1.3
carbon source	NAG (C)	-0.3	+0.1	+0.2	-0.2	-1.7
carbon source	NAG (C)	-0.2	+0.2	+0.1	-0.1	-1.7
phage	P. simiae OR1 MOI 0.1	-0.6	+0.6	+0.3	-0.5	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.2	+1.4	-0.6	-1.1	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.7	+0.4	-1.3	-0.1
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-0.3	+0.9	+0.9	-1.0	-0.3
nophagecontrol	Only library	+0.3	+1.2	-0.3	-1.0	+0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+1.4	-0.2	-0.3	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.0	+1.3	+0.4	-0.7	+0.2
carbon source	L-Valine (C)	-0.5	+1.1	+1.4	-0.2	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.1	+0.7	+0.6	-0.6	+1.1
agar plate interaction control	Taped volatile agar plate with no fungus	-0.1	+0.8	+0.5	+1.0	-0.4
carbon source	L-Valine (C)	-0.1	+0.9	+1.3	+0.3	-0.5
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-0.1	+1.3	+0.4	+0.9	-0.1
root	root sample 6; outgrowth in LB	+0.8	+1.6	+0.1	+0.5	-0.4
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	+0.0	+1.9	+1.0	+0.4	-0.0