Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_25875 and PS417_25880 are separated by 67 nucleotidesPS417_25880 and PS417_25885 are separated by 121 nucleotidesPS417_25885 and PS417_25890 are separated by 16 nucleotidesPS417_25890 and PS417_25895 are separated by 45 nucleotides PS417_25875: PS417_25875 - DNA primase, at 5,586,230 to 5,588,203 _25875 PS417_25880: PS417_25880 - RNA polymerase subunit sigma-70, at 5,588,271 to 5,590,121 _25880 PS417_25885: PS417_25885 - diguanylate cyclase, at 5,590,243 to 5,593,986 _25885 PS417_25890: PS417_25890 - tRNA-Met, at 5,594,003 to 5,594,079 _25890 PS417_25895: PS417_25895 - glyoxalase, at 5,594,125 to 5,594,550 _25895
Group Condition PS417_25875 PS417_25880 PS417_25885 PS417_25890 PS417_25895
carbon source L-Leucine (C) N.D. N.D. -0.1 N.D. -1.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. +0.0 N.D. -1.4
phage JP1 MOI 10 N.D. N.D. +0.2 N.D. -1.5
soil soil sample 8; outgrowth in LB N.D. N.D. +0.1 N.D. -1.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -0.1 N.D. -0.9
rhizosphere rhizosphere sample 8; outgrowth in LB N.D. N.D. +0.1 N.D. -1.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. +0.1 N.D. -1.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -0.0 N.D. -0.9
seeds Growth on radish seeds for 72 hours N.D. N.D. +0.3 N.D. -1.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. +0.0 N.D. -0.9
carbon source 2-Deoxy-D-ribonic lithium salt (C) N.D. N.D. -0.1 N.D. -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -0.0 N.D. -0.8
phage P. simiae Grant Run MOI 10 N.D. N.D. +0.1 N.D. -0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. +0.0 N.D. -0.8
supernatant control Vogels_fungal_media 0.1X N.D. N.D. +0.1 N.D. -0.8
stress Doxycycline hyclate 0.001 mg/ml N.D. N.D. +0.1 N.D. -0.8
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. +0.1 N.D. -0.7
soil soil sample 4; outgrowth in LB N.D. N.D. +0.1 N.D. -0.7
soil soil sample 2; outgrowth in LB N.D. N.D. +0.4 N.D. -0.9
phage JP1 MOI 0.1 N.D. N.D. +0.2 N.D. -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. +0.1 N.D. +0.7
solid stress 80% Methanol 2 mM; solid stress N.D. N.D. +0.1 N.D. +0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. +0.1 N.D. +0.7
carbon source L-Valine (C) N.D. N.D. -0.2 N.D. +1.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. -0.0 N.D. +0.9
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -0.1 N.D. +1.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days N.D. N.D. -0.0 N.D. +1.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. +0.1 N.D. +1.0
phage JP1 MOI 1 N.D. N.D. -0.0 N.D. +1.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. -0.2 N.D. +5.3
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