Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_25850 and PS417_25855 overlap by 10 nucleotidesPS417_25855 and PS417_25860 are separated by 74 nucleotidesPS417_25860 and PS417_25865 are separated by 32 nucleotidesPS417_25865 and PS417_25870 are separated by 109 nucleotides PS417_25850: PS417_25850 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase, at 5,582,802 to 5,583,320 _25850 PS417_25855: PS417_25855 - dihydroneopterin aldolase, at 5,583,311 to 5,583,664 _25855 PS417_25860: PS417_25860 - glycerol-3-phosphate acyltransferase, at 5,583,739 to 5,584,308 _25860 PS417_25865: PS417_25865 - UGMP family protein, at 5,584,341 to 5,585,366 _25865 PS417_25870: PS417_25870 - hypothetical protein, at 5,585,476 to 5,585,868 _25870
Group Condition PS417_25850 PS417_25855 PS417_25860 PS417_25865 PS417_25870
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -1.9 N.D. N.D.
stress Cisplatin 0.01 mg/ml N.D. N.D. -1.1 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -1.1 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -1.0 N.D. N.D.
soil soil sample 4; outgrowth in LB N.D. N.D. -0.9 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -0.9 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -0.9 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. -0.8 N.D. N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -0.8 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. -0.8 N.D. N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -0.8 N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. -0.7 N.D. N.D.
soil soil sample 5; outgrowth in LB N.D. N.D. -0.7 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. -0.7 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. -0.7 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -0.7 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. -0.6 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -0.6 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. -0.6 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -0.6 N.D. N.D.
carbon source L-Leucine (C) N.D. N.D. -0.6 N.D. N.D.
supernatant control Vogels_fungal_media 0.1X N.D. N.D. -0.6 N.D. N.D.
soil soil sample 8; outgrowth in LB N.D. N.D. -0.6 N.D. N.D.
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. N.D. -0.5 N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. -0.5 N.D. N.D.
solid stress Fraxetin 3 mM; solid stress N.D. N.D. -0.5 N.D. N.D.
stress Nickel (II) chloride 1 mM N.D. N.D. -0.5 N.D. N.D.
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. -0.5 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. +0.6 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. +0.7 N.D. N.D.
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