Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_25810 and PS417_25815 are separated by 97 nucleotidesPS417_25815 and PS417_25820 overlap by 1 nucleotidesPS417_25820 and PS417_25825 are separated by 9 nucleotidesPS417_25825 and PS417_25830 are separated by 284 nucleotides PS417_25810: PS417_25810 - ribosomal RNA small subunit methyltransferase A, at 5,573,850 to 5,574,662 _25810 PS417_25815: PS417_25815 - magnesium transporter ApaG, at 5,574,760 to 5,575,140 _25815 PS417_25820: PS417_25820 - diadenosine tetraphosphatase, at 5,575,140 to 5,575,991 _25820 PS417_25825: PS417_25825 - sulfurtransferase, at 5,576,001 to 5,576,330 _25825 PS417_25830: PS417_25830 - serine/threonine protein kinase, at 5,576,615 to 5,578,537 _25830
Group Condition PS417_25810 PS417_25815 PS417_25820 PS417_25825 PS417_25830
soil soil sample 3; outgrowth in LB N.D. -0.7 N.D. -1.7 -1.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.7 N.D. -1.9 +0.2
soil soil sample 2; outgrowth in LB N.D. -1.0 N.D. -0.4 -1.4
solid stress Fraxetin 3 mM; solid stress N.D. -2.5 N.D. -0.1 -0.0
soil soil sample 6; outgrowth in LB N.D. -1.6 N.D. -0.4 -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.8 N.D. -0.4 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.8 N.D. -0.2 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. -0.2 N.D. -1.1 -0.9
seeds Growth on radish seeds for 72 hours N.D. -1.1 N.D. -0.7 -0.4
soil soil sample 8; outgrowth in LB N.D. -1.1 N.D. +0.0 -1.0
soil soil sample 4; outgrowth in LB N.D. -1.2 N.D. +0.1 -0.9
no phage control Time6-nophage N.D. -0.6 N.D. -1.4 +0.0
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. +0.1 N.D. -0.6 -1.5
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. -0.7 N.D. -0.5 -0.8
carbon source L-Valine (C) N.D. -1.2 N.D. -0.7 +0.1
carbon source 2-Deoxy-D-ribonic lithium salt (C) N.D. +0.2 N.D. -1.6 -0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +0.2 N.D. +0.2 -1.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. -1.3 N.D. +0.3 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.6 N.D. +0.5 +0.0
liquid stress Fraxetin 3 mM; liquid stress N.D. -1.3 N.D. +0.6 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.7 N.D. -1.2 -0.3
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +0.6 N.D. -1.3 -0.1
seeds Growth on radish seeds for 24 hours N.D. -1.1 N.D. +0.8 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.2 N.D. +1.1 -0.3
stress R2A with Polymyxin B sulfate 0.002 mg/ml N.D. +0.9 N.D. -1.1 +0.1
phage P. simiae OR Antrim MOI 1 N.D. -0.8 N.D. +1.3 -0.1
agar plate interaction control Taped volatile agar plate with no fungus N.D. -0.6 N.D. +1.3 +0.0
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. +0.3 N.D. +1.8 -0.1
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. +2.4 N.D. +0.5 -0.1
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. +1.9 N.D. +1.1 +0.1
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