Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_25780 and PS417_25785 are separated by 1 nucleotidesPS417_25785 and PS417_25790 overlap by 4 nucleotidesPS417_25790 and PS417_25795 are separated by 130 nucleotidesPS417_25795 and PS417_25800 overlap by 26 nucleotides PS417_25780: PS417_25780 - molecular chaperone DnaJ, at 5,566,149 to 5,566,916 _25780 PS417_25785: PS417_25785 - mannose-1-phosphate guanylyltransferase, at 5,566,918 to 5,567,592 _25785 PS417_25790: PS417_25790 - aminoglycoside phosphotransferase, at 5,567,589 to 5,568,614 _25790 PS417_25795: PS417_25795 - LPS biosynthesis protein, at 5,568,745 to 5,571,555 _25795 PS417_25800: PS417_25800 - molecular chaperone SurA, at 5,571,530 to 5,572,867 _25800
Group Condition PS417_25780 PS417_25785 PS417_25790 PS417_25795 PS417_25800
soil soil sample 5; outgrowth in LB -1.1 N.D. -4.4 N.D. N.D.
root root sample 6; outgrowth in LB -0.7 N.D. -4.2 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.4 N.D. -1.8 N.D. N.D.
soil soil sample 4; outgrowth in LB -0.6 N.D. -2.6 N.D. N.D.
rhizosphere rhizosphere sample 1; outgrowth in LB -0.1 N.D. -3.1 N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml -1.5 N.D. -1.7 N.D. N.D.
soil soil sample 2; outgrowth in LB -1.6 N.D. -1.6 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.0 N.D. -1.1 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.1 N.D. -0.7 N.D. N.D.
soil soil sample 8; outgrowth in LB -0.7 N.D. -1.8 N.D. N.D.
motility outer cut, LB soft agar motility assay +0.0 N.D. -2.5 N.D. N.D.
stress Polymyxin B sulfate 0.006 mg/ml +0.2 N.D. -2.6 N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.1 N.D. -2.3 N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.2 N.D. -2.5 N.D. N.D.
carbon source L-Valine (C) +0.0 N.D. -2.3 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 N.D. -1.8 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.2 N.D. -2.0 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.2 N.D. -1.9 N.D. N.D.
motility inner cut, LB soft agar motility assay +0.6 N.D. -2.6 N.D. N.D.
motility outer cut, LB soft agar motility assay +0.1 N.D. -2.0 N.D. N.D.
motility outer cut, LB soft agar motility assay +0.1 N.D. -2.0 N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.1 N.D. -2.0 N.D. N.D.
stress Phosphomycin 0.003 mg/ml +0.3 N.D. -2.1 N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.3 N.D. -2.0 N.D. N.D.
carbon source L-Valine (C) +0.3 N.D. -1.9 N.D. N.D.
stress Gentamicin 0.008 mg/ml +0.6 N.D. -2.1 N.D. N.D.
phage JP1 MOI 10 -1.4 N.D. +0.7 N.D. N.D.
stress methylglyoxal 0.032 vol% -1.4 N.D. +1.1 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +2.2 N.D. -0.5 N.D. N.D.
nitrogen source Urea (N) +0.3 N.D. +2.1 N.D. N.D.
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