Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_25655	PS417_25660	PS417_25665	PS417_25670	PS417_25675
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	N.D.	-1.3	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	N.D.	-1.2	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	N.D.	-0.8	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	N.D.	N.D.	-0.5	-0.6
soil	soil sample 3; outgrowth in LB	N.D.	N.D.	N.D.	-0.9	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	N.D.	-0.4	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	N.D.	N.D.	+0.0	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	N.D.	-0.5	-0.4
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	N.D.	N.D.	N.D.	-0.4	-0.5
no stress control on plate	growth on LB_noSalt plate	N.D.	N.D.	N.D.	-0.4	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	N.D.	N.D.	-0.5	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	N.D.	+0.1	-0.8
phage	JP1 MOI 1	N.D.	N.D.	N.D.	-0.7	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	N.D.	+0.2	-0.7
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	N.D.	N.D.	-0.7	+0.3
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	N.D.	-0.8	+0.4
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	N.D.	-0.6	+0.3
phage	JP1 MOI 10	N.D.	N.D.	N.D.	-0.6	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	N.D.	-0.7	+0.6
phage	P. simiae ORA MOI 1	N.D.	N.D.	N.D.	+0.4	-0.5
rhizosphere	rhizosphere sample 1; outgrowth in LB	N.D.	N.D.	N.D.	-0.4	+0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	N.D.	-0.4	+0.6
phage	P. simiae OR Antrim MOI 10	N.D.	N.D.	N.D.	+0.5	-0.3
seeds	Growth on radish seeds for 72 hours	N.D.	N.D.	N.D.	+0.6	-0.3
phage	P. simiae Grant Run MOI 0.1	N.D.	N.D.	N.D.	+0.7	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	N.D.	N.D.	+0.7	-0.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	N.D.	+0.3	+0.6
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	N.D.	N.D.	N.D.	+0.7	+0.1
seeds	Growth on radish seeds for 72 hours	N.D.	N.D.	N.D.	+0.7	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	N.D.	N.D.	+0.4	+1.0