Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_25625 and PS417_25630 are separated by 7 nucleotidesPS417_25630 and PS417_25635 overlap by 11 nucleotidesPS417_25635 and PS417_25640 are separated by 185 nucleotidesPS417_25640 and PS417_25645 are separated by 209 nucleotides PS417_25625: PS417_25625 - hypothetical protein, at 5,536,044 to 5,536,490 _25625 PS417_25630: PS417_25630 - pantothenate kinase, at 5,536,498 to 5,537,247 _25630 PS417_25635: PS417_25635 - biotin--protein ligase, at 5,537,237 to 5,538,196 _25635 PS417_25640: PS417_25640 - tyrosine--tRNA ligase, at 5,538,382 to 5,539,581 _25640 PS417_25645: PS417_25645 - peptidase M23, at 5,539,791 to 5,541,209 _25645
Group Condition PS417_25625 PS417_25630 PS417_25635 PS417_25640 PS417_25645
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.9 N.D. -0.1 N.D. -5.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 N.D. -0.4 N.D. -4.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 N.D. -0.5 N.D. -4.6
stress Gentamicin 0.008 mg/ml -0.3 N.D. -1.8 N.D. -2.5
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.3 N.D. -0.6 N.D. -3.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 N.D. +0.1 N.D. -3.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 N.D. +0.2 N.D. -2.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 N.D. +0.0 N.D. -2.8
stress Benzalkonium Chloride 0.012 mg/ml -0.1 N.D. -0.2 N.D. -2.8
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.0 N.D. -0.2 N.D. -2.8
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.0 N.D. -0.4 N.D. -2.5
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.6 N.D. +0.1 N.D. -2.5
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.2 N.D. -0.7 N.D. -2.0
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.1 N.D. -0.5 N.D. -2.2
stress Choline Lysine 25 mM +0.1 N.D. -0.2 N.D. -2.5
stress L-Lysine 60 mM +0.4 N.D. -0.4 N.D. -2.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 N.D. +0.2 N.D. -2.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 N.D. +0.3 N.D. -2.4
stress Neomycin 0.04 mg/ml +0.2 N.D. -0.7 N.D. -1.9
stress Phosphomycin 0.003 mg/ml +0.1 N.D. +0.3 N.D. -2.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 N.D. +0.3 N.D. -2.2
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.5 N.D. +0.6 N.D. -2.1
soil soil sample 5; outgrowth in LB -0.3 N.D. +0.8 N.D. -2.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 N.D. +0.4 N.D. -2.1
rhizosphere rhizosphere sample 1; outgrowth in LB -0.7 N.D. +0.8 N.D. -1.5
soil soil sample 4; outgrowth in LB -0.3 N.D. +1.0 N.D. -1.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.1 N.D. +1.5 N.D. -1.8
stress Doxycycline hyclate 0.001 mg/ml -0.4 N.D. -0.4 N.D. +2.3
solid stress Fraxetin 3 mM; solid stress +0.2 N.D. -0.3 N.D. +2.5
solid stress Fraxetin 3 mM; solid stress +0.1 N.D. -0.6 N.D. +2.9
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