Fitness for 5 genes in Pseudomonas simiae WCS417

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

500 ntPS417_00245 and PS417_00250 overlap by 4 nucleotidesPS417_00250 and PS417_00255 are separated by 35 nucleotidesPS417_00255 and PS417_00260 are separated by 194 nucleotidesPS417_00260 and PS417_00265 are separated by 2 nucleotides PS417_00245: PS417_00245 - oligopeptidase A, at 47,179 to 49,230 _00245 PS417_00250: PS417_00250 - DNA-binding protein, at 49,227 to 49,502 _00250 PS417_00255: PS417_00255 - hypothetical protein, at 49,538 to 49,741 _00255 PS417_00260: PS417_00260 - gluconate 2-dehydrogenase, at 49,936 to 50,688 _00260 PS417_00265: PS417_00265 - GMC family oxidoreductase, at 50,691 to 52,475 _00265
Group Condition PS417_00245 PS417_00250 PS417_00255 PS417_00260 PS417_00265
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.0 N.D. N.D. +0.0 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.1 N.D. N.D. -0.1 +0.1
motility outer cut, LB soft agar motility assay -0.8 N.D. N.D. -0.2 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 N.D. N.D. -0.4 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 N.D. N.D. -0.6 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 N.D. N.D. -0.2 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.9 N.D. N.D. -0.1 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 N.D. N.D. +0.4 -0.3
solid stress Fraxetin 3 mM; solid stress -0.7 N.D. N.D. +0.1 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 N.D. N.D. +0.2 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 N.D. N.D. +0.2 -0.2
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.4 N.D. N.D. -0.6 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 N.D. N.D. +0.3 +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 N.D. N.D. +0.2 +0.1
agar plate interaction control Taped volatile agar plate with no fungus -0.5 N.D. N.D. -0.1 +0.2
solid stress Fraxetin 3 mM; solid stress -0.8 N.D. N.D. +0.3 +0.2
motility outer cut, LB soft agar motility assay -0.6 N.D. N.D. +0.2 -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 N.D. N.D. +0.2 +0.1
seeds Growth on radish seeds for 72 hours -0.7 N.D. N.D. -0.0 +0.3
solid stress Fraxetin 3 mM; solid stress -0.6 N.D. N.D. +0.1 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.0 N.D. N.D. -0.6 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 N.D. N.D. +0.2 +0.5
nitrogen source Adenine (N) +0.6 N.D. N.D. -0.4 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 N.D. N.D. +0.3 +0.3
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 N.D. N.D. +0.5 +0.2
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.2 N.D. N.D. +0.5 +0.2
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.9 N.D. N.D. -0.2 -0.1
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.6 N.D. N.D. -0.2 +0.2
stress Gentamicin 0.008 mg/ml -0.0 N.D. N.D. +0.4 +0.6
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +1.4 N.D. N.D. -0.2 -0.1
remove
PS417_00245
plot		 remove
PS417_00250
plot		 remove
PS417_00255		 remove
PS417_00260
plot		 remove
PS417_00265
plot