Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF4973 and GFF4974 overlap by 4 nucleotidesGFF4974 and GFF4975 are separated by 13 nucleotidesGFF4975 and GFF4976 are separated by 43 nucleotidesGFF4976 and GFF4977 are separated by 146 nucleotides GFF4973 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 73,234 to 74,217 GFF4973 GFF4974 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 74,214 to 75,116 GFF4974 GFF4975 - Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1), at 75,130 to 76,347 GFF4975 GFF4976 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 76,391 to 77,170 GFF4976 GFF4977 - Transcriptional regulator for ferulate or vanillate catabolism, at 77,317 to 78,036 GFF4977
Group Condition GFF4973 GFF4974 GFF4975 GFF4976 GFF4977
complex community Community=Locust bean gum; Passage=4 +0.1 -1.4 +0.1 -0.5 -0.5
complex community Community=Locust bean gum; Passage=4 -0.7 -0.4 -0.1 -0.0 -0.4
complex community Community=guar; Passage=4 +0.2 -1.0 -0.2 +0.3 -0.6
complex community Community=arabino-guar; Passage=4 -0.3 +0.3 -0.1 -0.5 -0.7
vitamin M9 with calcium pantothenate 10 mg/mL -0.0 -0.6 +0.0 -0.2 -0.3
vitamin M9 with Supernatant from Cyptococcus -0.3 -0.3 +0.0 +0.0 -0.5
phage phage_bap4 -0.1 -0.7 +0.1 -0.2 -0.1
complex community Community=arabino-guar; Passage=4 +0.2 +0.2 +0.1 -0.5 -1.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.1 -0.2 -0.1 -0.1 -0.5
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.1 -0.4 +0.1 -0.0 -0.5
vitamin M9 with calcium pantothenate 10 mg/mL -0.3 -0.3 +0.1 -0.1 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.3 -0.2 +0.0 +0.3 -0.5
complex community Community=Kojac gum; Passage=1 -0.2 -0.3 +0.0 +0.1 -0.3
complex community Community=Kojac gum; Passage=4 -0.3 +0.1 +0.2 +0.0 -0.6
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.2 -0.3 +0.1 +0.1 -0.4
complex community Community=guar; Passage=4 +0.3 +0.5 -0.1 -0.4 -0.9
complex community Community=arabino-guar; Passage=4 -0.1 -0.1 +0.2 +0.1 -0.7
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.2 -0.1 +0.0 +0.2 -0.5
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.2 -0.1 +0.1 +0.3 -0.6
vitamin M9 with calcium pantothenate 10 mg/mL -0.1 -0.4 -0.0 +0.4 -0.3
complex community Community=guar; Passage=4 +0.1 -0.1 -0.0 +0.7 -1.2
vitamin M9 with Supernatant from Cyptococcus -0.2 +0.3 +0.1 -0.0 -0.6
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.1 +0.1 +0.2 -0.1 -0.5
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.2 +0.4 -0.0 -0.3 -0.2
complex community Community=Locust bean gum; Passage=4 -0.2 +0.5 +0.2 -0.5 -0.3
vitamin M9 with Supernatant from Cyptococcus +0.1 -0.4 +0.1 +0.4 -0.5
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.2 -0.1 +0.1 +0.3 -0.3
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.1 +0.5 -0.1 +0.2 -0.5
complex community Community=arabino-guar; Passage=4 +0.3 +0.8 +0.5 -0.3 -0.8
complex community Community=guar; Passage=4 +0.1 +0.6 +0.2 +0.3 -0.6
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