Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_25400 and PS417_25405 are separated by 155 nucleotidesPS417_25405 and PS417_25410 are separated by 238 nucleotidesPS417_25410 and PS417_25415 are separated by 41 nucleotidesPS417_25415 and PS417_25420 are separated by 22 nucleotides PS417_25400: PS417_25400 - bacterioferritin, at 5,502,772 to 5,503,236 _25400 PS417_25405: PS417_25405 - catalase, at 5,503,392 to 5,504,840 _25405 PS417_25410: PS417_25410 - 50S ribosomal protein L17, at 5,505,079 to 5,505,465 _25410 PS417_25415: PS417_25415 - DNA-directed RNA polymerase subunit alpha, at 5,505,507 to 5,506,508 _25415 PS417_25420: PS417_25420 - 30S ribosomal protein S4, at 5,506,531 to 5,507,151 _25420
Group Condition PS417_25400 PS417_25405 PS417_25410 PS417_25415 PS417_25420
solid stress Fraxetin 3 mM; solid stress -2.1 -4.2 N.D. N.D. N.D.
solid stress Fraxetin 3 mM; solid stress -2.6 -3.6 N.D. N.D. N.D.
solid stress Fraxetin 3 mM; solid stress -2.2 -3.1 N.D. N.D. N.D.
solid stress Fraxetin 3 mM; solid stress -1.6 -3.5 N.D. N.D. N.D.
solid stress Fraxetin 2 mM; solid stress -1.2 -3.0 N.D. N.D. N.D.
solid stress Fraxetin 2 mM; solid stress -1.2 -2.9 N.D. N.D. N.D.
solid stress Fraxetin 2 mM; solid stress -1.3 -2.7 N.D. N.D. N.D.
solid stress Fraxetin 2 mM; solid stress -1.1 -2.6 N.D. N.D. N.D.
solid stress Fraxetin 2 mM; solid stress -1.0 -2.2 N.D. N.D. N.D.
solid stress 80% Methanol 0.5 mM; solid stress -1.0 -0.9 N.D. N.D. N.D.
solid stress Fraxetin 1 mM; solid stress -0.7 -0.9 N.D. N.D. N.D.
solid stress Fraxetin 1 mM; solid stress -0.6 -0.9 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.8 -0.6 N.D. N.D. N.D.
solid stress Fraxetin 1 mM; solid stress -0.2 -1.0 N.D. N.D. N.D.
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -1.4 +0.1 N.D. N.D. N.D.
stress methylglyoxal 0.032 vol% -1.0 -0.2 N.D. N.D. N.D.
solid stress Fraxetin 1 mM; solid stress -0.2 -1.0 N.D. N.D. N.D.
stress L-Lysine 60 mM -0.1 -1.1 N.D. N.D. N.D.
stress Choline Lysine 25 mM -0.3 -0.9 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 -0.4 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.7 -0.4 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.5 -0.6 N.D. N.D. N.D.
agar plate interaction control Taped volatile agar plate with no fungus -0.7 -0.3 N.D. N.D. N.D.
soil soil sample 6; outgrowth in LB -0.5 -0.5 N.D. N.D. N.D.
liquid stress Fraxetin 2 mM; liquid stress -0.5 -0.5 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.4 -0.5 N.D. N.D. N.D.
rhizosphere rhizosphere sample 1; outgrowth in LB -0.7 -0.2 N.D. N.D. N.D.
root root sample 6; outgrowth in LB -0.9 +0.2 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.4 +0.6 N.D. N.D. N.D.
stress Cobalt chloride 0.16 mM +1.4 -0.2 N.D. N.D. N.D.
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