Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_25385	PS417_25390	PS417_25395	PS417_25400	PS417_25405
solid stress	Fraxetin 3 mM; solid stress	N.D.	-0.2	-0.7	-2.6	-3.6
solid stress	Fraxetin 3 mM; solid stress	N.D.	+0.2	-0.6	-2.1	-4.2
solid stress	Fraxetin 3 mM; solid stress	N.D.	-0.1	-0.5	-2.2	-3.1
stress	Cisplatin 0.01 mg/ml	N.D.	-0.5	-4.4	-0.1	-0.4
solid stress	Fraxetin 2 mM; solid stress	N.D.	-0.8	-0.3	-1.2	-3.0
solid stress	Fraxetin 3 mM; solid stress	N.D.	+0.2	-0.5	-1.6	-3.5
solid stress	Fraxetin 2 mM; solid stress	N.D.	-0.1	-0.4	-1.3	-2.7
solid stress	Fraxetin 2 mM; solid stress	N.D.	-0.1	-0.3	-1.2	-2.9
solid stress	Fraxetin 2 mM; solid stress	N.D.	-0.2	-0.5	-1.1	-2.6
soil	soil sample 6; outgrowth in LB	N.D.	-2.3	-0.5	-0.5	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-2.9	-0.3	-0.4	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-3.0	-0.1	-0.3	-0.2
solid stress	Fraxetin 2 mM; solid stress	N.D.	+0.2	-0.4	-1.0	-2.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-2.7	-0.0	-0.4	-0.2
soil	soil sample 5; outgrowth in LB	N.D.	-1.9	-0.6	-0.6	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-2.6	-0.1	-0.3	-0.1
stress	L-Lysine 60 mM	N.D.	-1.7	-0.3	-0.1	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	-2.1	-0.2	-0.4	-0.3
stress	Choline Lysine 25 mM	N.D.	-1.8	-0.1	-0.3	-0.9
solid stress	80% Methanol 0.5 mM; solid stress	N.D.	-0.7	-0.3	-1.0	-0.9
soil	soil sample 3; outgrowth in LB	N.D.	-1.7	-0.6	-0.2	-0.4
solid stress	Fraxetin 1 mM; solid stress	N.D.	-1.2	-0.4	-0.2	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-2.2	+0.0	-0.6	-0.0
motility	inner cut, LB soft agar motility assay	N.D.	-2.5	-0.1	-0.1	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-1.6	-0.4	-0.6	-0.1
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	N.D.	-1.3	-0.0	-1.4	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-1.1	-0.1	-0.8	-0.6
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-2.1	-0.4	+0.2	-0.1
motility	inner cut, LB soft agar motility assay	N.D.	-1.7	-0.1	+0.3	-0.4
stress	methylglyoxal 0.032 vol%	N.D.	+0.8	-1.0	-1.0	-0.2