Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_25370	PS417_25375	PS417_25380	PS417_25385	PS417_25390
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-0.1	-0.7	N.D.	-2.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.1	+0.1	N.D.	-3.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+0.0	-0.3	N.D.	-2.9
soil	soil sample 6; outgrowth in LB	-0.1	+0.1	-0.4	N.D.	-2.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	+0.2	-1.0	N.D.	-2.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.1	-0.6	N.D.	-2.0
motility	outer cut, LB soft agar motility assay	+0.0	-0.1	-0.6	N.D.	-1.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	-0.0	-1.5	N.D.	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.1	-1.5	N.D.	-0.6
motility	inner cut, LB soft agar motility assay	+0.0	-0.1	+0.1	N.D.	-2.5
no phage control	Time6-nophage	-0.1	-0.1	-1.0	N.D.	-1.2
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	-0.0	-0.1	N.D.	-2.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.3	-0.1	-0.4	N.D.	-1.5
motility	inner cut, LB soft agar motility assay	-0.0	+0.0	-0.5	N.D.	-1.7
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.0	+0.0	-1.1	N.D.	-1.1
soil	soil sample 5; outgrowth in LB	-0.1	+0.3	-0.3	N.D.	-1.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.2	+0.9	N.D.	-2.6
soil	soil sample 7; outgrowth in LB	+0.0	+0.1	-1.0	N.D.	-1.2
phage moi 100	Time6-phageFRS	+0.2	-0.0	-2.3	N.D.	+0.2
soil	soil sample 3; outgrowth in LB	-0.2	+0.3	-0.3	N.D.	-1.7
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	+0.2	+0.1	-0.7	N.D.	-1.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.1	+0.1	+0.2	N.D.	-2.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4	-0.0	-1.3	N.D.	-0.8
motility	outer cut, LB soft agar motility assay	-0.0	-0.1	+0.5	N.D.	-2.0
motility	outer cut, LB soft agar motility assay	-0.0	-0.0	+0.5	N.D.	-1.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.0	+0.8	N.D.	-1.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.3	-0.1	+0.7	N.D.	-1.3
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	+0.1	-0.1	+0.9	N.D.	-1.2
seeds	Growth on radish seeds for 72 hours	-0.0	+0.2	+1.6	N.D.	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.0	+0.2	+1.4	N.D.	-0.8