Fitness for 5 genes in Pseudomonas simiae WCS417

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

500 ntPS417_25355 and PS417_25360 are separated by 97 nucleotidesPS417_25360 and PS417_25365 are separated by 21 nucleotidesPS417_25365 and PS417_25370 are separated by 182 nucleotidesPS417_25370 and PS417_25375 are separated by 952 nucleotides PS417_25355: PS417_25355 - AraC family transcriptional regulator, at 5,489,945 to 5,490,904 _25355 PS417_25360: PS417_25360 - Isochorismatase, at 5,491,002 to 5,491,565 _25360 PS417_25365: PS417_25365 - trans-aconitate methyltransferase, at 5,491,587 to 5,492,348 _25365 PS417_25370: PS417_25370 - hypothetical protein, at 5,492,531 to 5,493,466 _25370 PS417_25375: PS417_25375 - hypothetical protein, at 5,494,419 to 5,496,899 _25375
Group Condition PS417_25355 PS417_25360 PS417_25365 PS417_25370 PS417_25375
phage P. simiae OR1 MOI 0.1 -0.6 -0.5 -0.1 -0.3 -0.2
seeds Growth on radish seeds for 72 hours -0.3 -1.2 -0.1 +0.2 +0.0
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.1 -1.2 -0.2 -0.0 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.3 -0.1 -0.3 -0.3 -0.2
stress methylglyoxal 0.032 vol% -0.8 -0.1 -0.1 +0.2 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -0.7 -0.1 +0.3 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 -0.4 +0.2 -0.0 +0.0
rhizosphere rhizosphere sample 2; outgrowth in LB -0.2 -0.3 -0.4 -0.0 +0.3
seeds Growth on radish seeds for 72 hours -0.3 -0.4 -0.1 +0.3 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 +0.3 +0.2 -0.2 -0.0
phage P. simiae OR Antrim MOI 0.1 +0.2 -0.3 +0.2 -0.3 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 -0.5 +0.1 +0.1 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 -0.1 +0.5 -0.3 -0.1
phage JP1 MOI 10 -0.3 +0.2 -0.3 +0.4 +0.1
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x -0.5 +0.4 -0.1 +0.2 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 +0.2 +0.2 -0.2 +0.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 -0.6 -0.2 +0.6 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.2 +0.4 -0.4 -0.1 +0.2
stress 1-ethyl-3-methylimidazolium chloride 200 mM +0.6 -0.2 -0.2 +0.2 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.2 -0.4 +0.3 +0.2 +0.2
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +0.2 -0.2 +0.3 +0.1
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.4 -0.1 +0.4 -0.1 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.4 +0.7 +0.3 -0.0 +0.2
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +0.3 -0.1 +0.3 -0.1
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +0.6 -0.4 +0.2 +0.2
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.4 +0.1 -0.1 -0.2 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 +0.6 -0.1 -0.0 +0.2
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +0.3 +0.5 +0.3 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +1.2 +0.7 -0.1 +0.1 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.2 +0.6 +0.8 +0.8 +0.0
remove
PS417_25355
plot		 remove
PS417_25360
plot		 remove
PS417_25365		 remove
PS417_25370
plot		 remove
PS417_25375
plot