Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_25320	PS417_25325	PS417_25330	PS417_25335	PS417_25340
liquid stress	Scopoletin 3 mM; liquid stress	-1.4	-0.1	-0.1	-0.0	-0.4
phage	JP1 MOI 1	-0.5	+0.0	+0.2	-0.1	-1.5
phage	P. simiae ORA MOI 0.1	-0.5	+0.1	+0.1	-0.1	-1.4
liquid stress	Fraxetin 3 mM; liquid stress	-1.4	+0.2	-0.1	-0.1	-0.5
agar plate interaction control	Taped volatile agar plate with no fungus	-0.9	+0.0	-0.2	-0.0	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	-0.3	+0.0	-0.1	-0.6
liquid stress	Fraxetin 3 mM; liquid stress	-1.4	+0.0	-0.1	-0.1	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.8	-0.2	+0.0	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	+0.2	-0.5	-0.2	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.8	+0.3	+0.0	-0.5
liquid stress	Scopoletin 3 mM; liquid stress	-1.1	-0.2	+0.2	-0.1	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	-0.0	-0.3	+0.0	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	-0.7	-0.2	-0.1	+0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.3	+0.1	+0.6	-0.2	-1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.6	-0.6	-0.2	+0.1	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	-0.0	-0.6	-0.1	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.9	+0.2	-0.1	-0.2	+0.3
seeds	Growth on radish seeds for 72 hours	-0.5	-0.7	+0.0	-0.1	+0.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8	+0.2	+0.4	-0.1	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.9	+0.2	+0.2	+0.1	+0.7
stress	R2A with Fusaric 120 ug/mL	+1.1	-0.1	-0.2	-0.1	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.6	+0.3	-0.0	-0.0	+1.1
stress	methylglyoxal 0.032 vol%	+1.4	-0.4	+0.4	-0.0	-0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.4	-0.2	-0.0	+0.8
stress	R2A with Fusaric 120 ug/mL	+1.2	-0.1	-0.2	-0.1	+0.4
stress	R2A with Fusaric 120 ug/mL	+1.3	+0.0	-0.1	+0.1	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.0	+0.4	+0.4	-0.1	+1.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+2.8	+0.1	-0.2	-0.0	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+5.2	-0.3	+0.1	+0.1	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+5.2	-0.1	-0.2	+0.1	+0.1