Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_25305 and PS417_25310 are separated by 11 nucleotidesPS417_25310 and PS417_25315 are separated by 94 nucleotidesPS417_25315 and PS417_25320 are separated by 64 nucleotidesPS417_25320 and PS417_25325 are separated by 101 nucleotides PS417_25305: PS417_25305 - peptide ABC transporter permease, at 5,479,065 to 5,480,330 _25305 PS417_25310: PS417_25310 - hypothetical protein, at 5,480,342 to 5,480,854 _25310 PS417_25315: PS417_25315 - membrane protein, at 5,480,949 to 5,481,647 _25315 PS417_25320: PS417_25320 - dTDP-4-dehydrorhamnose reductase, at 5,481,712 to 5,482,581 _25320 PS417_25325: PS417_25325 - mechanosensitive ion channel protein, at 5,482,683 to 5,484,767 _25325
Group Condition PS417_25305 PS417_25310 PS417_25315 PS417_25320 PS417_25325
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 -1.2 -0.9 -0.3 -0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -0.3 -1.5 -0.6 -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 -0.7 -0.7 -0.6 -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -0.5 -1.0 -0.9 +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.6 -0.8 -1.6 -0.1 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.0 -0.5 -1.7 -0.5 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -1.3 +0.1 -1.0 -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 -0.1 -1.4 -0.5 -0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.1 -0.2 -1.1 -0.9 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.2 -0.5 -1.5 -0.3 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 -0.7 -1.1 -0.1 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 +0.1 -1.2 -0.9 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 +0.3 -1.1 -0.5 -0.3
agar plate interaction control Taped volatile agar plate with no fungus -0.3 +0.4 -1.0 -0.9 +0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.2 +0.4 -1.3 -0.6 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 +0.4 -1.9 -0.4 -0.0
phage P. simiae OR1 MOI 0.1 -0.1 -0.1 -1.6 +0.8 +0.1
soil soil sample 7; outgrowth in LB -0.4 -1.0 +1.1 -0.2 -0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.0 +0.2 +1.6 -0.8 +0.2
rhizosphere rhizosphere sample 2; outgrowth in LB +0.3 -0.2 +1.7 -0.2 -0.3
stress R2A with Fusaric 120 ug/mL +0.6 -0.8 +0.4 +1.2 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.0 -0.4 +1.6 -0.3 +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 +0.8 +0.9 -0.6 +0.3
soil soil sample 5; outgrowth in LB -0.5 -0.6 +2.3 +0.2 +0.5
stress R2A with Fusaric 120 ug/mL +0.7 -0.3 +0.3 +1.3 +0.0
root root sample 6; outgrowth in LB +0.2 -0.3 +2.0 -0.2 +0.9
rhizosphere rhizosphere sample 1; outgrowth in LB +0.2 +0.2 +2.0 +0.1 +0.4
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.1 +0.1 -0.2 +2.8 +0.1
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.2 -0.4 -0.4 +5.2 -0.1
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.3 -0.2 -0.2 +5.2 -0.3
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